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MACPET: model-based analysis for ChIA-PET

• Authors : Vardaxis, Ioannis; Drabløs, Finn; Rye, Morten Beck

• Source: Biostatistics

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ChIAPoP: a new tool for ChIA-PET data analysis.

• Authors : Huang W; National Exposure Research Laboratory, Environmental Protection Agency, Research Triangle Park, NC 27709, USA.; Medvedovic M

Subjects: Chromatin/Chromatin/Chromatin/*metabolism; Base Sequence ; Binding Sites/Binding Sites/Binding Sites/genetics

• Source: Nucleic acids research [Nucleic Acids Res] 2019 Apr 23; Vol. 47 (7), pp. e37.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Mapping Multi-factor-mediated Chromatin Interactions to Assess Dysregulation of Lung Cancer-related Genes

• Authors : Yan Zhang; Jingwen Zhang; Wei Zhang

Subjects: Lung cancer; 3D genome; ChIA-PET

• Source: Genomics, Proteomics & Bioinformatics, Vol 21, Iss 3, Pp 573-588 (2023)

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ChIA-PET2: A Versatile and Flexible Pipeline for ChIA-PET Data Analysis

• Authors : Li, G.; Chen, Y.; Snyder, M. P. ...

Subjects: Alleles; Bioinformatics; Chromatin

• Source: Nucleic Acids Research

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MICC: an R package for identifying chromatin interactions from ChIA-PET data

• Authors : He, Chao; Zhang, Michael Q.; Wang, Xiaowo

Subjects: GENOME ANALYSIS

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Mango: a bias-correcting ChIA-PET analysis pipeline

• Authors : Phanstiel, Douglas H.; Boyle, Alan P.; Heidari, Nastaran

Subjects: GENOME ANALYSIS

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ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis.

• Authors : Li G; MOE Key Laboratory of Bioinformatics; Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST

Subjects: Alleles* ; Chromatin Assembly and Disassembly* ; Inheritance Patterns*

• Source: Nucleic acids research [Nucleic Acids Res] 2017 Jan 09; Vol. 45 (1), pp. e4. Date of Electronic Publication: 2016 Sep 12.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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A statistical model of ChIA-PET data for accurate detection of chromatin 3D interactions.

• Authors : Paulsen J; Institute for Cancer Genetics and Informatics, Oslo University Hospital, PO Box 4950, Nydalen, N-0424 Oslo, Norway .; Rødland EA

Subjects: Models, Statistical*; Chromatin/Chromatin/Chromatin/*chemistry ; Genomics/Genomics/Genomics/*methods

• Source: Nucleic acids research [Nucleic Acids Res] 2014 Oct; Vol. 42 (18), pp. e143. Date of Electronic Publication: 2014 Aug 11.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited

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Nucleosome Eviction and Multiple Co-Factor Binding Predict Estrogen-Receptor-Alpha-Asociated Long-Range Interactions

• Authors : He, C.; Wang, X.; Zhang, Michael Q. ...

Subjects: Chromatin Interaction Analysis by Paired-End Tag Sequencing (ChIA-PET); Binding sites (Biochemistry); Michigan Cancer Foundation-7 (MCF7)

• Source: Nucleic Acids Research

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A Network of Chromatin Factors Is Regulating the Transition to Postembryonic Development in Caenorhabditis elegans

• Authors : Chantal Wicky; Peter Erdelyi; Xing Wang

Subjects: 0301 basic medicine; Cellular differentiation; Embryonic Development

• Source: G3: Genes, Genomes, Genetics, Vol 7, Iss 2, Pp 343-353 (2017)G3: Genes|Genomes|Genetics

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