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Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery.

• Authors : Sosa DN; Stanford University, Department of Biomedical Data Science, Stanford, CA, USA.; Neculae G

Subjects: Semantics* ; Drug Discovery*/Drug Discovery*/Drug Discovery*/methods; Drug Repositioning/Drug Repositioning/Drug Repositioning/methods

• Source: Journal of biomedical semantics [J Biomed Semantics] 2024 May 01; Vol. 15 (1), pp. 5. Date of Electronic Publication: Publisher: Biomed Central Country of Publication: England NLM ID: 101531992 Publication Model: Electronic Cited Medium:

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Identification of gene biomarkers for brain diseases via multi-network topological semantics extraction and graph convolutional network.

• Authors : Zhang P; College of Information Science and Engineering, Zaozhuang University, Zaozhuang, 277100, Shandong, China.; College of Informatics, Huazhong Agricultural University, Wuhan, 430070, China.

Subjects: Semantics* ; Alzheimer Disease*/Alzheimer Disease*/Alzheimer Disease*/genetics; Humans

• Source: BMC genomics [BMC Genomics] 2024 Feb 14; Vol. 25 (1), pp. 175. Date of Electronic Publication: 2024 Feb 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Large-scale identification of social and behavioral determinants of health from clinical notes: comparison of Latent Semantic Indexing and Generative Pretrained Transformer (GPT) models.

• Authors : Roy S; Foundational Medical Studies, Population Health Informatics, Oakland University William Beaumont School of Medicine, Oakland University, 586 Pioneer Dr, 460 O'Dowd Hall, Rochester, MI, 48309-4482, USA.; Morrell S

Subjects: Electronic Health Records* ; Semantics* ; Social Determinants of Health*

• Source: BMC medical informatics and decision making [BMC Med Inform Decis Mak] 2024 Oct 10; Vol. 24 (1), pp. 296. Date of Electronic Publication: 2024 Oct 10.Publisher: BioMed Central Country of Publication: England NLM ID: 101088682 Publication Model: Electronic Cited Medium:

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simona: a comprehensive R package for semantic similarity analysis on bio-ontologies.

• Authors : Gu Z; Molecular Precision Oncology Program, National Center for Tumor Diseases (NCT), Im Neuenheimer Feld 280, Heidelberg, 69120, Germany. .

Subjects: Semantics* ; Biological Ontologies* ; Software*

• Source: BMC genomics [BMC Genomics] 2024 Sep 16; Vol. 25 (1), pp. 869. Date of Electronic Publication: 2024 Sep 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium:

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Effective type label-based synergistic representation learning for biomedical event trigger detection.

• Authors : Hao A; School of Computer Science and Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore, Singapore.; Aural & Language Intelligence, Institute for Infocomm Research, Agency for Science, Technology and Research, 1 Fusionopolis Way, Singapore, Singapore.

Subjects: Semantics*; Natural Language Processing ; Machine Learning

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Jul 31; Vol. 25 (1), pp. 251. Date of Electronic Publication: 2024 Jul 31.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Semantic units: organizing knowledge graphs into semantically meaningful units of representation.

• Authors : Vogt L; TIB Leibniz Information Centre for Science and Technology, Welfengarten 1B, 30167, Hanover, Germany. .; Kuhn T

Subjects: Semantics*; Computer Graphics ; Biological Ontologies

• Source: Journal of biomedical semantics [J Biomed Semantics] 2024 May 27; Vol. 15 (1), pp. 7. Date of Electronic Publication: Publisher: Biomed Central Country of Publication: England NLM ID: 101531992 Publication Model: Electronic Cited Medium:

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Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019).

• Authors : He Z; School of Information, College of Communication and Information, Florida State University, 142 Collegiate Loop, Tallahassee, FL, 32306-2100, USA. .; Tao C

Subjects: Data Mining* ; Semantics*; Humans

• Source: BMC medical informatics and decision making [BMC Med Inform Decis Mak] 2020 Dec 14; Vol. 20 (Suppl 4), pp. 315. Date of Electronic Publication: 2020 Dec 14.Publisher: BioMed Central Country of Publication: England NLM ID: 101088682 Publication Model: Electronic Cited Medium:

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Expansion of medical vocabularies using distributional semantics on Japanese patient blogs.

• Authors : Ahltorp, Magnus¹ ; Skeppstedt, Maria²; Kitajima, Shiho³

• Source: Journal of Biomedical Semantics. 9/26/2016, Vol. 7, p1-18. 18p.

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MetaTron: advancing biomedical annotation empowering relation annotation and collaboration.

• Authors : Irrera O; Department of Information Engineering, University of Padova, Padua, Italy. .; Marchesin S

Subjects: Semantics* ; Power, Psychological*; PubMed

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Mar 14; Vol. 25 (1), pp. 112. Date of Electronic Publication: 2024 Mar 14.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Simcryocluster: a semantic similarity clustering method of cryo-EM images by adopting contrastive learning.

• Authors : Tang H; Department of Computing, Xiangtan University, Xiangtan, China.; Wang Y

Subjects: Semantics* ; Image Processing, Computer-Assisted*/Image Processing, Computer-Assisted*/Image Processing, Computer-Assisted*/methods; Cryoelectron Microscopy/Cryoelectron Microscopy/Cryoelectron Microscopy/methods

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Feb 20; Vol. 25 (1), pp. 77. Date of Electronic Publication: 2024 Feb 20.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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