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Academic Journal

GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge.

Authors : Carvalho, Alexandra M.¹ ; Oliveira, Arlindo L.²

Source: Algorithms for Molecular Biology. 2011, Vol. 6 Issue 1, p13-25. 13p.

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Academic Journal

AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses.

Authors : Jiantao Shi^1,2; Wentao Yang³; Mingjie Chen³

Source: PLoS ONE. 2011, Vol. 6 Issue 9, p1-10. 10p.

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Academic Journal

Assessing the Effects of Symmetry on Motif Discovery and Modeling.

Authors : Motlhabi, Lala M.¹; Stormo, Gary D.¹

Source: PLoS ONE. 2011, Vol. 6 Issue 9, p1-8. 8p.

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Academic Journal

Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences.

Authors : Amos-Binks, Adam¹; Patulea, Catalin²; Pitre, Sylvain¹

Source: BMC Bioinformatics. 2011, Vol. 12 Issue 1, p225-237. 13p.

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Academic Journal

De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference.

Authors : Keilwagen, Jens¹ ; Grau, Jan²; Paponov, Ivan A.^3,4

Source: PLoS Computational Biology. Feb2011, Vol. 7 Issue 2, p1-13. 13p. 1 Diagram, 3 Charts, 5 Graphs.

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Academic Journal

SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model.

Authors : Nung Kion Lee¹; Dianhui Wang¹

Source: BMC Bioinformatics. 2011 Supplement 1, Vol. 12 Issue Suppl 1, p1-10. 10p. 3 Charts.

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Academic Journal

HIV Protein Sequence Hotspots for Crosstalk with Host Hub Proteins.

Authors : Sarmady, Mahdi¹; Dampier, William¹; Tozeren, Aydin¹

Source: PLoS ONE. 2011, Vol. 6 Issue 8, p1-11. 11p.

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Academic Journal

Sequence- and Interactome-Based Prediction of Viral Protein Hotspots Targeting Host Proteins: A Case Study for HIV Nef.

Authors : Sarmady, Mahdi¹; Dampier, William¹; Tozeren, Aydin¹

Source: PLoS ONE. 2011, Vol. 6 Issue 6, p1-11. 11p.

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Academic Journal

Biological network motif detection and evaluation.

Authors : Wooyoung Kim¹ ; Min Li^1,2 ; Jianxin Wang²

Source: BMC Systems Biology. 2011 Supplement 3, Vol. 5 Issue Suppl 3, p1-13. 13p. 3 Diagrams, 8 Charts, 2 Graphs.

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Academic Journal

Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs.

Authors : Bingchuan Liu^1,2; Jiajia Chen^1,3; Bairong Shen¹

Source: BMC Systems Biology. Jan2011 Supplement 1, Vol. 5, p1-10. 10p. 2 Diagrams, 3 Charts, 3 Graphs.

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فلترة النتائج

GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge.

AMD, an Automated Motif Discovery Tool Using Stepwise Refinement of Gapped Consensuses.

Assessing the Effects of Symmetry on Motif Discovery and Modeling.

Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences.

De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference.

SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model.

HIV Protein Sequence Hotspots for Crosstalk with Host Hub Proteins.

Sequence- and Interactome-Based Prediction of Viral Protein Hotspots Targeting Host Proteins: A Case Study for HIV Nef.

Biological network motif detection and evaluation.

Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs.

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