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Academic Journal

PyChelator: a Python-based Colab and web application for metal chelator calculations.

  • Authors : Spahiu E; Institute of Molecular and Cell Physiology, Hannover Medical School, Carl-Neuberg-Str. 1, 30625, Hannover, Germany.; Kastrati E

Subjects: Software* ; Chelating Agents*/Chelating Agents*/Chelating Agents*/chemistry ; Metals*/Metals*/Metals*/chemistry

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Jul 16; Vol. 25 (1), pp. 239. Date of Electronic Publication: 2024 Jul 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium:

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Academic Journal

Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.

  • Authors : Parra RG; Computational Biology Group, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Spain.; Freiberger MI

Subjects: Software* ; Protein Folding* ; Internet*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W233-W237.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

iM-Seeker: a webserver for DNA i-motifs prediction and scoring via automated machine learning.

  • Authors : Yu H; Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK.; Li F

Subjects: Nucleotide Motifs* ; Software* ; Machine Learning*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W19-W28.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

GCMS-ID: a webserver for identifying compounds from gas chromatography mass spectrometry experiments.

  • Authors : Wakoli J; Department of Biological Sciences, University of Alberta, Edmonton, AB T6G 2E9, Canada.; Anjum A

Subjects: Gas Chromatography-Mass Spectrometry*/Gas Chromatography-Mass Spectrometry*/Gas Chromatography-Mass Spectrometry*/methods ; Metabolomics*/Metabolomics*/Metabolomics*/methods ; Software*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W381-W389.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

SHAPEwarp-web: sequence-agnostic search for structurally homologous RNA regions across databases of chemical probing data.

  • Authors : Scholten NR; School for Life Science and Technology, Hanze University of Applied Sciences, 9747 AS Groningen, The Netherlands.; Haandrikman D

Subjects: RNA*/RNA*/RNA*/chemistry ; Software* ; Internet*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W362-W367.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

PPI3D: a web server for searching, analyzing and modeling protein-protein, protein-peptide and protein-nucleic acid interactions.

  • Authors : Dapkūnas J; Institute of Biotechnology, Life Sciences Center, Vilnius University, Saulėtekio av. 7, Vilnius LT-10257, Lithuania.; Timinskas A

Subjects: Internet* ; Software*; Binding Sites

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W264-W271.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

WeSA: a web server for improving analysis of affinity proteomics data.

  • Authors : Shtetinska MM; BioQuant, Heidelberg University, 69120 Heidelberg, Germany.; Biochemistry Center (BZH), Heidelberg University, 69120 Heidelberg, Germany.

Subjects: Proteomics*/Proteomics*/Proteomics*/methods ; Software* ; Internet*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W333-W340.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts.

  • Authors : Philipp M; Image and Signal Processing Group, Department of Computer Science, Leipzig University, Augustusplatz 10, 04109 Leipzig, Germany.; Moth CW

Subjects: Internet* ; Software* ; Mutation*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W132-W139.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

RNAhugs web server for customized 3D RNA structure alignment.

  • Authors : Zurkowski M; Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology, Piotrowo 2, 60-965 Poznan, Poland.; Swiercz M

Subjects: Software* ; Nucleic Acid Conformation* ; Internet*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W348-W353.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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Academic Journal

PypKa server: online pKa predictions and biomolecular structure preparation with precomputed data from PDB and AlphaFold DB.

  • Authors : Reis PBPS; BioISI - Instituto de Biossistemas e Ciências Integrativas, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal.; Machine Learning Research, Bayer AG, Müllerstraße 178, 13353 Berlin, Germany.

Subjects: Software* ; Internet* ; Molecular Dynamics Simulation*

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W294-W298.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium:

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