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Publication : plos computational biology
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Academic Journal

Distal loop flexibility of a regulatory domain modulates dynamics and activity of C-terminal SRC kinase (csk).

  • Authors : Barkho S; Department of Chemistry and Biochemistry, University of California at San Diego, La Jolla, California, United States of America.; Pierce LC

Subjects: src-Family Kinases/src-Family Kinases/src-Family Kinases/*metabolism; Amino Acid Sequence ; Biocatalysis

  • Source: PLoS computational biology [PLoS Comput Biol] 2013; Vol. 9 (9), pp. e1003188. Date of Electronic Publication: 2013 Sep 05.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Print-Electronic Cited Medium: Internet

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Academic Journal

Allosteric regulation in STAT3 interdomains is mediated by a rigid core: SH2 domain regulation by CCD in D170A variant.

  • Authors : Zhao T; Department of Chemistry, Southern Methodist University, Dallas, Texas, United States of America.; Karki N

Subjects: src Homology Domains*/src Homology Domains*/src Homology Domains*/genetics ; STAT3 Transcription Factor*/STAT3 Transcription Factor*/STAT3 Transcription Factor*/genetics ; STAT3 Transcription Factor*/STAT3 Transcription Factor*/STAT3 Transcription Factor*/metabolism

  • Source: PLoS computational biology [PLoS Comput Biol] 2022 Dec 21; Vol. 18 (12), pp. e1010794. Date of Electronic Publication: 2022 Dec 21 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Experimental validation of computerised models of clustering of platelet glycoprotein receptors that signal via tandem SH2 domain proteins.

  • Authors : Maqsood Z; Institute of Cardiovascular Sciences, IBR Building, College of Medical and Dental Sciences, University of Birmingham, Birmingham, United Kingdom.; Alacris Theranostics, GmbH, Berlin, Germany.

Subjects: src Homology Domains* ; Platelet Membrane Glycoproteins*; Computer Simulation

  • Source: PLoS computational biology [PLoS Comput Biol] 2022 Nov 28; Vol. 18 (11), pp. e1010708. Date of Electronic Publication: 2022 Nov 28 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Data-Driven Modeling of Src Control on the Mitochondrial Pathway of Apoptosis: Implication for Anticancer Therapy Optimization

Subjects: 0301 basic medicine; QH301-705.5; [MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS]

  • Source: PLoS Comput BiolPLoS Computational Biology, Vol 9, Iss 4, p e1003011 (2013)PLoS Computational Biology

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Academic Journal

The Spatiotemporal Pattern of Src Activation at Lipid Rafts Revealed by Diffusion-Corrected FRET Imaging

Subjects: Diffusion; 0301 basic medicine; 03 medical and health sciences

  • Source: PLoS Comput BiolPLoS Computational Biology, Vol 4, Iss 7, p e1000127 (2008)

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Academic Journal

Src Kinase Conformational Activation: Thermodynamics, Pathways, and Mechanisms

Subjects: Models, Molecular; 0301 basic medicine; Binding Sites

  • Source: PLoS Comput BiolPLoS Computational Biology, Vol 4, Iss 3, p e1000047 (2008)

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Academic Journal

A disordered encounter complex is central to the yeast Abp1p SH3 domain binding pathway.

  • Authors : Gerlach GJ; Department of Chemistry, Skidmore College, Saratoga Springs, New York, United States.; Carrock R

Subjects: Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/chemistry ; Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/genetics ; Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/Intrinsically Disordered Proteins*/metabolism

  • Source: PLoS computational biology [PLoS Comput Biol] 2020 Sep 14; Vol. 16 (9), pp. e1007815. Date of Electronic Publication: 2020 Sep 14 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm.

Subjects: Algorithms* ; Software* ; src Homology Domains*

  • Source: PLoS computational biology [PLoS Comput Biol] 2008 Apr 04; Vol. 4 (4), pp. e1000052. Date of Electronic Publication: 2008 Apr 04.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Electronic Cited Medium: Internet

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Academic Journal

From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors.

  • Authors : Zafra Ruano A; Department of Physical Chemistry and Institute of Biotechnology, University of Granada, Campus Fuentenueva s/n, Granada, Spain.; Cilia E

Subjects: src Homology Domains*/src Homology Domains*/src Homology Domains*/genetics; Amino Acid Sequence ; Animals

  • Source: PLoS computational biology [PLoS Comput Biol] 2016 May 23; Vol. 12 (5), pp. e1004938. Date of Electronic Publication: 2016 May 23 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

The SH2 domain regulates c-Abl kinase activation by a cyclin-like mechanism and remodulation of the hinge motion.

  • Authors : Dölker N; Structural Biology and Biocomputing Programme, Spanish National Cancer Research Center (CNIO), Madrid, Spain.; Górna MW

Subjects: src Homology Domains*; Cyclins/Cyclins/Cyclins/*chemistry ; Cyclins/Cyclins/Cyclins/*metabolism

  • Source: PLoS computational biology [PLoS Comput Biol] 2014 Oct 09; Vol. 10 (10), pp. e1003863. Date of Electronic Publication: 2014 Oct 09 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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