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Academic Journal

MicrobeTrace: Retooling molecular epidemiology for rapid public health response.

  • Source: PLoS Computational Biology. 9/7/2021, Vol. 17 Issue 9, p1-16. 16p. 3 Diagrams, 1 Graph, 1 Map.

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Academic Journal

Model diagnostics and refinement for phylodynamic models.

  • Authors : Lau MSY; Department of Ecology and Evolutionary Biology, Princeton University, New Jersey, USA.; Grenfell BT

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods ; Molecular Epidemiology/Molecular Epidemiology/Molecular Epidemiology/*methods; Animals

  • Source: PLoS computational biology [PLoS Comput Biol] 2019 Apr 05; Vol. 15 (4), pp. e1006955. Date of Electronic Publication: 2019 Apr 05 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Computational pan-genome mapping and pairwise SNP-distance improve detection of Mycobacterium tuberculosis transmission clusters.

Subjects: Mycobacterium tuberculosis/Mycobacterium tuberculosis/Mycobacterium tuberculosis/*genetics ; Tuberculosis/Tuberculosis/Tuberculosis/*transmission; Chromosome Mapping

  • Source: PLoS computational biology [PLoS Comput Biol] 2019 Dec 09; Vol. 15 (12), pp. e1007527. Date of Electronic Publication: 2019 Dec 09 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations.

  • Authors : Li W; The School of Electrical Engineering and Computer Science, The Pennsylvania State University, University Park, PA, United States of America.; Lin L

Subjects: Endogenous Retroviruses/Endogenous Retroviruses/Endogenous Retroviruses/*genetics ; Genetics, Population/Genetics, Population/Genetics, Population/*methods ; Genomics/Genomics/Genomics/*methods

  • Source: PLoS computational biology [PLoS Comput Biol] 2019 Mar 28; Vol. 15 (3), pp. e1006564. Date of Electronic Publication: 2019 Mar 28 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Molecular Infectious Disease Epidemiology: Survival Analysis and Algorithms Linking Phylogenies to Transmission Trees.

  • Authors : Kenah E; Biostatistics Department and Emerging Pathogens Institute, University of Florida, Gainesville, Florida, United States of America.; Center for Inference and Dynamics of Infectious Diseases, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

Subjects: Communicable Diseases/Communicable Diseases/Communicable Diseases/*epidemiology ; Communicable Diseases/Communicable Diseases/Communicable Diseases/*transmission ; Disease Transmission, Infectious/Disease Transmission, Infectious/Disease Transmission, Infectious/*statistics & numerical data

  • Source: PLoS computational biology [PLoS Comput Biol] 2016 Apr 12; Vol. 12 (4), pp. e1004869. Date of Electronic Publication: 2016 Apr 12 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A Systematic Bayesian Integration of Epidemiological and Genetic Data.

  • Authors : Lau MS; Department of Ecology and Evolutionary Biology, Princeton, New Jersey, United States of America.; Marion G

Subjects: Bayes Theorem* ; Models, Biological*; Computational Biology/Computational Biology/Computational Biology/*methods

  • Source: PLoS computational biology [PLoS Comput Biol] 2015 Nov 23; Vol. 11 (11), pp. e1004633. Date of Electronic Publication: 2015 Nov 23 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Linkage of viral sequences among HIV-infected village residents in Botswana: estimation of linkage rates in the presence of missing data.

  • Authors : Carnegie NB; Department of Biostatistics, Harvard School of Public Health, Boston, Massachusetts, United States of America.; Wang R

Subjects: HIV Envelope Protein gp120/HIV Envelope Protein gp120/HIV Envelope Protein gp120/*genetics ; HIV Infections/HIV Infections/HIV Infections/*transmission ; HIV Infections/HIV Infections/HIV Infections/*virology

  • Source: PLoS computational biology [PLoS Comput Biol] 2014 Jan; Vol. 10 (1), pp. e1003430. Date of Electronic Publication: 2014 Jan 09.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: Print-Electronic Cited Medium: Internet

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