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Academic Journal

Stable developmental patterns of gene expression without morphogen gradients.

  • Authors : Majka M; Institute of Theoretical Physics and Mark Kac Center for Complex Systems Research, Jagiellonian University, Kraków, Poland.; Department of Physics, East Carolina University, Greenville, North Carolina, United States of America.

Subjects: Gene Expression Regulation, Developmental*/Gene Expression Regulation, Developmental*/Gene Expression Regulation, Developmental*/genetics; Animals ; Computer Simulation

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Dec 02; Vol. 20 (12), pp. e1012555. Date of Electronic Publication: 2024 Dec 02 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Image-based force inference by biomechanical simulation.

Subjects: Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/physiology ; Models, Biological*; Animals

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Dec 02; Vol. 20 (12), pp. e1012629. Date of Electronic Publication: 2024 Dec 02 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Unveiling inter-embryo variability in spindle length over time: Towards quantitative phenotype analysis.

  • Authors : Le Cunff Y; CNRS, Univ Rennes, IGDR (Institut Genetics and Development of Rennes) - UMR 6290, Rennes, France.; Chesneau L

Subjects: Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/embryology ; Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/physiology ; Caenorhabditis elegans*/Caenorhabditis elegans*/Caenorhabditis elegans*/genetics

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Sep 05; Vol. 20 (9), pp. e1012330. Date of Electronic Publication: 2024 Sep 05 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Novel mathematical approach to accurately quantify 3D endothelial cell morphology and vessel geometry based on fluorescently marked endothelial cell contours: Application to the dorsal aorta of wild-type and Endoglin-deficient zebrafish embryos.

  • Authors : Seeler D; Faculty of Science, Institute of Mathematics, University of Potsdam, Potsdam, Germany.; Faculty of Science, Institute of Biochemistry and Biology, University of Potsdam, Potsdam, Germany.

Subjects: Zebrafish*/Zebrafish*/Zebrafish*/embryology ; Endoglin*/Endoglin*/Endoglin*/metabolism ; Endoglin*/Endoglin*/Endoglin*/genetics

  • Source: PLoS computational biology [PLoS Comput Biol] 2024 Aug 30; Vol. 20 (8), pp. e1011924. Date of Electronic Publication: 2024 Aug 30 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

The importance of mechanical constraints for proper polarization and psuedo-cleavage furrow generation in the early Caenorhabditis elegans embryo.

  • Authors : Aras BS; Department of Mathematics, The Ohio State University, Columbus, Ohio, United States of America.; Zhou YC

Subjects: Cell Polarity* ; Models, Theoretical*; Caenorhabditis elegans/Caenorhabditis elegans/Caenorhabditis elegans/*embryology

  • Source: PLoS computational biology [PLoS Comput Biol] 2018 Jul 09; Vol. 14 (7), pp. e1006294. Date of Electronic Publication: 2018 Jul 09 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Geometry can provide long-range mechanical guidance for embryogenesis.

  • Authors : Dicko M; LJK, Univ. Grenoble Alpes, Grenoble, France.; LJK, CNRS, Grenoble, France.

Subjects: Models, Biological*; Actomyosin/Actomyosin/Actomyosin/*physiology ; Drosophila/Drosophila/Drosophila/*embryology

  • Source: PLoS computational biology [PLoS Comput Biol] 2017 Mar 27; Vol. 13 (3), pp. e1005443. Date of Electronic Publication: 2017 Mar 27 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A digital framework to build, visualize and analyze a gene expression atlas with cellular resolution in zebrafish early embryogenesis.

  • Authors : Castro-González C; Biomedical Image Technologies, ETSIT, Universidad Politécnica de Madrid, CEIMoncloa, Madrid, Spain; Research Center in Bioengineering, Biomaterials and Nanomedicine (CIBER-BBN), Madrid, Spain

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods ; Embryo, Nonmammalian/Embryo, Nonmammalian/Embryo, Nonmammalian/*cytology ; Transcriptome/Transcriptome/Transcriptome/*genetics

  • Source: PLoS computational biology [PLoS Comput Biol] 2014 Jun 19; Vol. 10 (6), pp. e1003670. Date of Electronic Publication: 2014 Jun 19 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

A hybrid of light-field and light-sheet imaging to study myocardial function and intracardiac blood flow during zebrafish development.

  • Authors : Wang Z; Department of Bioengineering, University of California, Los Angeles, California, United States of America.; Ding Y

Subjects: Heart*/Heart*/Heart*/diagnostic imaging ; Heart*/Heart*/Heart*/growth & development ; Heart*/Heart*/Heart*/physiology

  • Source: PLoS computational biology [PLoS Comput Biol] 2021 Jul 06; Vol. 17 (7), pp. e1009175. Date of Electronic Publication: 2021 Jul 06 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Computable early Caenorhabditis elegans embryo with a phase field model.

  • Authors : Kuang X; Center for Quantitative Biology, Peking University, Beijing, China.; Guan G

Subjects: Models, Biological*; Caenorhabditis elegans/Caenorhabditis elegans/Caenorhabditis elegans/*embryology ; Embryo, Nonmammalian/Embryo, Nonmammalian/Embryo, Nonmammalian/*physiology

  • Source: PLoS computational biology [PLoS Comput Biol] 2022 Jan 14; Vol. 18 (1), pp. e1009755. Date of Electronic Publication: 2022 Jan 14 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Template-based mapping of dynamic motifs in tissue morphogenesis.

  • Authors : Stern T; Department of Molecular Biology, Princeton University, Princeton, New Jersey, United States of America.; Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, United States of America.

Subjects: Computational Biology/Computational Biology/Computational Biology/*methods ; Image Processing, Computer-Assisted/Image Processing, Computer-Assisted/Image Processing, Computer-Assisted/*methods ; Morphogenesis/Morphogenesis/Morphogenesis/*physiology

  • Source: PLoS computational biology [PLoS Comput Biol] 2020 Aug 21; Vol. 16 (8), pp. e1008049. Date of Electronic Publication: 2020 Aug 21 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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