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New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.

• Authors : Mounir, Mohamed¹; Lucchetta, Marta¹; Silva, Tiago C.²

• Source: PLoS Computational Biology. 3/5/2019, Vol. 15 Issue 3, p1-18. 18p. 2 Diagrams, 1 Chart, 2 Graphs.

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New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx.

• Authors : Mohamed Mounir; Marta Lucchetta; Tiago C Silva

Subjects: Biology (General); QH301-705.5

• Source: PLoS Computational Biology, Vol 15, Iss 3, p e1006701 (2019)

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PLUS: Predicting cancer metastasis potential based on positive and unlabeled learning.

• Authors : Zhou, Junyi¹ (AUTHOR); Lu, Xiaoyu^2,3 (AUTHOR); Chang, Wennan^2,4 (AUTHOR)

• Source: PLoS Computational Biology. 3/29/2022, Vol. 18 Issue 3, p1-24. 24p. 2 Diagrams, 1 Chart, 3 Graphs.

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Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?

• Authors : Diaz-Colunga, Juan^1,2,3 (AUTHOR); Diaz-Uriarte, Ramon^1,2 (AUTHOR)

• Source: PLoS Computational Biology. 12/21/2021, Vol. 17 Issue 12, p1-23. 23p. 2 Diagrams, 1 Chart, 2 Graphs.

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Structure Learning for Gene Regulatory Networks.

• Authors : Federico, Anthony^1,2 (AUTHOR); Kern, Joseph³ (AUTHOR); Varelas, Xaralabos³ (AUTHOR)

• Source: PLoS Computational Biology. 5/18/2023, Vol. 19 Issue 5, p1-28. 28p. 5 Diagrams, 2 Charts, 2 Graphs.

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Tumor cell intrinsic and extrinsic features predict prognosis in estrogen receptor positive breast cancer.

• Authors : Yao, Kevin¹ (AUTHOR); Schaafsma, Evelien^2,3 (AUTHOR); Zhang, Baoyi⁴ (AUTHOR)

• Source: PLoS Computational Biology. 3/9/2022, Vol. 18 Issue 3, p1-22. 22p. 1 Diagram, 1 Chart, 5 Graphs.

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Identifying prognostic pairwise relationships among bacterial species in microbiome studies.

• Authors : Devlin, Sean M.¹ (AUTHOR) ; Martin, Axel¹ (AUTHOR); Ostrovnaya, Irina¹ (AUTHOR)

• Source: PLoS Computational Biology. 11/9/2021, Vol. 17 Issue 11, p1-12. 12p. 1 Chart, 2 Graphs.

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High-dimensional mediation analysis in survival models.

• Authors : Luo, Chengwen^1,2 (AUTHOR); Fa, Botao^1,2 (AUTHOR); Yan, Yuting² (AUTHOR)

• Source: PLoS Computational Biology. 4/17/2020, Vol. 16 Issue 4, p1-15. 15p. 1 Color Photograph, 4 Charts, 1 Graph.

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Every which way? On predicting tumor evolution using cancer progression models.

• Authors : Diaz-Uriarte, Ramon^1,2 ; Vasallo, Claudia^1,2

• Source: PLoS Computational Biology. 8/2/2019, Vol. 15 Issue 8, p1-29. 29p. 2 Diagrams, 5 Graphs.

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Patient-Specific Data Fusion Defines Prognostic Cancer Subtypes.

• Authors : Yuan, Yinyin^1,2 ; Savage, Richard S.³; Markowetz, Florian^1,2

• Source: PLoS Computational Biology. Oct2011, Vol. 7 Issue 10, p1-12. 12p. 5 Diagrams, 1 Chart, 2 Graphs.

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