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MolluscDB 2.0: a comprehensive functional and evolutionary genomics database for over 1400 molluscan species.

• Authors : Liu, Fuyun^1,2 (AUTHOR); Cai, Bingcheng¹ (AUTHOR); Lian, Shanshan^1,2 (AUTHOR)

Subjects: *BIOLOGICAL evolution; *FUNCTIONAL genomics; *MULTIOMICS

• Source: Nucleic Acids Research. 1/6/2025, Vol. 53 Issue D1, pD1075-D1086. 12p.

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PubTator 3.0: an AI-powered literature resource for unlocking biomedical knowledge.

• Authors : Wei, Chih-Hsuan¹ (AUTHOR); Allot, Alexis¹ (AUTHOR); Lai, Po-Ting¹ (AUTHOR)

Subjects: *ARTIFICIAL intelligence; *CHATGPT; *GENERATIVE pre-trained transformers

• Source: Nucleic Acids Research. 7/5/2024, Vol. 52 Issue W1, pW540-W546. 7p.

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ASD2023: towards the integrating landscapes of allosteric knowledgebase.

• Authors : He, Jixiao^1,2 (AUTHOR); Liu, Xinyi^1,2 (AUTHOR); Zhu, Chunhao³ (AUTHOR)

Subjects: *DRUG discovery; *ALLOSTERIC regulation; *GEOGRAPHICAL discoveries

• Source: Nucleic Acids Research. 1/5/2024, Vol. 52 Issue D1, pD376-D383. 8p.

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GenomicKB: a knowledge graph for the human genome.

• Authors : Feng, Fan¹ (AUTHOR); Tang, Feitong² (AUTHOR); Gao, Yijia² (AUTHOR)

Subjects: *KNOWLEDGE graphs; *HUMAN genome; *SCIENTIFIC discoveries

• Source: Nucleic Acids Research. 1/6/2023, Vol. 51 Issue D1, pD950-D956. 7p.

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CellTracer: a comprehensive database to dissect the causative multilevel interplay contributing to cell development trajectories.

• Authors : Guo, Qiuyan¹ (AUTHOR); Wang, Peng¹ (AUTHOR); Liu, Qian¹ (AUTHOR)

Subjects: *GENE expression profiling; *TUMOR microenvironment; *GEOGRAPHICAL discoveries

• Source: Nucleic Acids Research. 1/6/2023, Vol. 51 Issue D1, pD861-D869. 9p.

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Turning publicly available gene expression data into discoveries using gene set context analysis.

• Authors : Zhicheng Ji¹ (AUTHOR); Vokes, Steven A.^2,3 (AUTHOR); Dang, Chi V.⁴ (AUTHOR)

• Source: Nucleic Acids Research. 1/4/2016, Vol. 44 Issue 1, pe8-e21. 14p. 3 Diagrams, 1 Chart, 3 Graphs.

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Turning publicly available gene expression data into discoveries using gene set context analysis.

• Authors : Ji Z; Department of Biostatistics, Johns Hopkins University Bloomberg School of Public Health, 615 North Wolfe Street, Baltimore, MD 21205, USA.; Vokes SA

Subjects: Databases, Nucleic Acid*; Computational Biology/Computational Biology/Computational Biology/*methods ; Gene Expression Profiling/Gene Expression Profiling/Gene Expression Profiling/*methods

• Source: Nucleic acids research [Nucleic Acids Res] 2016 Jan 08; Vol. 44 (1), pp. e8. Date of Electronic Publication: 2015 Sep 08.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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BASAL: a universal mapping algorithm for nucleotide base-conversion sequencing.

• Authors : Xu, Moping^1,2 (AUTHOR); Liu, Xiaoyang³ (AUTHOR); Wang, Miao^1,2 (AUTHOR)

• Source: Nucleic Acids Research. 1/27/2025, Vol. 53 Issue 2, p1-15. 15p.

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Comprehensive genome annotation of the model ciliate Tetrahymena thermophila by in-depth epigenetic and transcriptomic profiling.

• Authors : Ye, Fei^1,2 (AUTHOR); Chen, Xiao^3,4 (AUTHOR); Li, Yuan^1,2 (AUTHOR)

• Source: Nucleic Acids Research. 1/27/2025, Vol. 53 Issue 2, p1-20. 20p.

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CICADA: a circRNA effort toward the ghost proteome.

• Authors : Fan, Liyuan¹ (AUTHOR); Zhou, Xinyuan^2,3 (AUTHOR); Li, Mian⁴ (AUTHOR)

Subjects: *PRODUCT coding; *CIRCULAR RNA; *SQUAMOUS cell carcinoma

• Source: Nucleic Acids Research. 1/13/2025, Vol. 53 Issue 1, p1-12. 12p.

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