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Academic Journal

Control of iron acquisition by multiple small RNAs unravels a new role for transcriptional terminator loops in gene regulation.

  • Authors : Solchaga Flores E; Expression Génétique Microbienne, UMR8261 CNRS, Université Paris Cité, Institut de Biologie Physico-Chimique, 75005 Paris, France.; Jagodnik J

Subjects: Gene Expression Regulation, Bacterial* ; Iron*/Iron*/Iron*/metabolism ; Escherichia coli Proteins*/Escherichia coli Proteins*/Escherichia coli Proteins*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Dec 11; Vol. 52 (22), pp. 13775-13791.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO.

  • Authors : Hamrock FJ; Department of Microbiology, School of Genetics & Microbiology, Moyne Institute of Preventive Medicine, Trinity College Dublin, Dublin, Ireland.; Ryan D

Subjects: Acinetobacter baumannii*/Acinetobacter baumannii*/Acinetobacter baumannii*/genetics ; Acinetobacter baumannii*/Acinetobacter baumannii*/Acinetobacter baumannii*/pathogenicity ; Acinetobacter baumannii*/Acinetobacter baumannii*/Acinetobacter baumannii*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Oct 14; Vol. 52 (18), pp. 11283-11300.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

RIL-seq reveals extensive involvement of small RNAs in virulence and capsule regulation in hypervirulent Klebsiella pneumoniae.

  • Authors : Goh KJ; Infectious Diseases Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117545, Singapore.; Department of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, Singapore 117596, Singapore.

Subjects: Klebsiella pneumoniae*/Klebsiella pneumoniae*/Klebsiella pneumoniae*/genetics ; Klebsiella pneumoniae*/Klebsiella pneumoniae*/Klebsiella pneumoniae*/pathogenicity ; Klebsiella pneumoniae*/Klebsiella pneumoniae*/Klebsiella pneumoniae*/drug effects

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Aug 27; Vol. 52 (15), pp. 9119-9138.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Unraveling the interplay between a small RNA and RNase E in bacteria.

  • Authors : Vigoda MB; Department of Microbiology and Molecular Genetics, IMRIC, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 9112102, Israel.; Argaman L

Subjects: Endoribonucleases*/Endoribonucleases*/Endoribonucleases*/metabolism ; Endoribonucleases*/Endoribonucleases*/Endoribonucleases*/genetics ; Escherichia coli*/Escherichia coli*/Escherichia coli*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Aug 27; Vol. 52 (15), pp. 8947-8966.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

A global survey of small RNA interactors identifies KhpA and KhpB as major RNA-binding proteins in Fusobacterium nucleatum.

  • Authors : Zhu Y; Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), Würzburg D-97080, Germany.; Ponath F

Subjects: Fusobacterium nucleatum*/Fusobacterium nucleatum*/Fusobacterium nucleatum*/genetics ; Fusobacterium nucleatum*/Fusobacterium nucleatum*/Fusobacterium nucleatum*/metabolism ; RNA-Binding Proteins*/RNA-Binding Proteins*/RNA-Binding Proteins*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Apr 24; Vol. 52 (7), pp. 3950-3970.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Global Hfq-mediated RNA interactome of nitrogen starved Escherichia coli uncovers a conserved post-transcriptional regulatory axis required for optimal growth recovery.

  • Authors : McQuail J; Section of Molecular Microbiology and Centre for Bacterial Resistance Biology, Faculty of Medicine, Imperial College London, UK.; Matera G

Subjects: Escherichia coli Proteins*/Escherichia coli Proteins*/Escherichia coli Proteins*/genetics ; Escherichia coli Proteins*/Escherichia coli Proteins*/Escherichia coli Proteins*/metabolism ; RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Mar 21; Vol. 52 (5), pp. 2323-2339.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

CRISPR-dCas13a system for programmable small RNAs and polycistronic mRNA repression in bacteria.

  • Authors : Ko SC; Department of Food Science and Biotechnology, Sungkyunkwan University (SKKU), 2066 Seobu-ro, Jangan-gu, Suwon 16419, Republic of Korea.; BioFoundry Research Center, Institute of Biotechnology and Bioengineering, Sungkyunkwan University (SKKU), 2066 Seobu-ro, Jangan-gu, Suwon 16419, Republic of Korea.

Subjects: Clustered Regularly Interspaced Short Palindromic Repeats* ; RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/genetics ; RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2024 Jan 11; Vol. 52 (1), pp. 492-506.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Role of the 5' end phosphorylation state for small RNA stability and target RNA regulation in bacteria.

  • Authors : Schilder A; Department of Microbiology, Immunobiology and Genetics, Max Perutz Labs, University of Vienna, Vienna Biocenter (VBC), 1030 Vienna, Austria.; Doctoral School in Microbiology and Environmental Science, University of Vienna, Vienna, Austria.

Subjects: RNA, Bacterial*/RNA, Bacterial*/RNA, Bacterial*/metabolism ; RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/genetics ; RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2023 Jun 09; Vol. 51 (10), pp. 5125-5143.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Red light-emitting short Mango-based system enables tracking a mycobacterial small noncoding RNA in infected macrophages.

  • Authors : Bychenko OS; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow 117997, Russia.; Khrulev AA

Subjects: Fluorescent Dyes*/Fluorescent Dyes*/Fluorescent Dyes*/metabolism ; Mangifera*/Mangifera*/Mangifera*/genetics ; Mangifera*/Mangifera*/Mangifera*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2023 Apr 11; Vol. 51 (6), pp. 2586-2601.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

A 3' UTR-derived small RNA connecting nitrogen and carbon metabolism in enteric bacteria.

  • Authors : Walling LR; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, Bethesda, MD 20892-4417, USA.; Kouse AB

Subjects: Ammonium Compounds* ; Gastrointestinal Microbiome* ; RNA, Small Untranslated*/RNA, Small Untranslated*/RNA, Small Untranslated*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2022 Sep 23; Vol. 50 (17), pp. 10093-10109.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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