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Shortcut barcoding and early pooling for scalable multiplex single-cell reduced-representation CpG methylation sequencing at single nucleotide resolution.

• Authors : Mai L; Department of Hepatobiliary Surgery II, Zhujiang Hospital, Southern Medical University, Guangzhou 510280, Guangdong Province, China.; Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences, Southern Medical University, and Guangdong Provincial Key Laboratory of Single Cell Technology and Application, Guangzhou 510515, Guangdong Province, China.

Subjects: DNA* ; DNA Methylation*/DNA Methylation*/DNA Methylation*/genetics; Humans

• Source: Nucleic acids research [Nucleic Acids Res] 2023 Nov 27; Vol. 51 (21), pp. e108.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Echtvar: compressed variant representation for rapid annotation and filtering of SNPs and indels.

• Authors : Pedersen BS; Center for Molecular Medicine, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands.; Oncode Institute, 3521 AL Utrecht, The Netherlands.

Subjects: Software* ; Polymorphism, Single Nucleotide*; Humans

• Source: Nucleic acids research [Nucleic Acids Res] 2023 Jan 11; Vol. 51 (1), pp. e3.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs.

• Authors : Poblete, Simón¹ ; Bottaro, Sandro¹; Bussi, Giovanni¹

• Source: Nucleic Acids Research. 2/28/2018, Vol. 46 Issue 4, p1674-1683. 10p.

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cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches.

• Authors : Martin-Herranz, Daniel E.¹; Ribeiro, António J. M.¹; Krueger, Felix²

• Source: Nucleic Acids Research. 11/16/2017, Vol. 45 Issue 20, p11559-11569. 11p.

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Network embedding-based representation learning for single cell RNA-seq data.

• Authors : Xiangyu Li¹; Weizheng Chen²; Yang Chen¹

• Source: Nucleic Acids Research. 11/2/2017, Vol. 45 Issue 19, p1-8. 8p.

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Prioritizing tests of epistasis through hierarchical representation of genomic redundancies.

• Authors : Cowman, Tyler¹; Koyutürk, Mehmet^1,2

• Source: Nucleic Acids Research. 8/21/2017, Vol. 45 Issue 14, p1-19. 19p.

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Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.

• Authors : Natale, Darren A.¹ (AUTHOR) ; Arighi, Cecilia N.² (AUTHOR); Blake, Judith A.³ (AUTHOR)

• Source: Nucleic Acids Research. 1/4/2017, Vol. 45 Issue D1, pD339-D346. 8p. 3 Color Photographs, 1 Diagram, 1 Chart.

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A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs

• Authors : Giovanni Bussi; Sandro Bottaro; Simón Poblete

Subjects: 0301 basic medicine; Models, Molecular; Point particle

• Source: Nucleic Acids Research

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cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches

• Authors : Wolf Reik; António J. M. Ribeiro; Thomas M. Stubbs ...

Subjects: 0301 basic medicine; CCCTC-Binding Factor; In silico

• Source: Nucleic Acids Research

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Integration of single cell data by disentangled representation learning.

• Authors : Guo T; MOE Key Laboratory of Bioinformatics; Bioinformatics Division and Center for Synthetic & Systems Biology, BNRist

Subjects: Algorithms* ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods

• Source: Nucleic acids research [Nucleic Acids Res] 2022 Jan 25; Vol. 50 (2), pp. e8.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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