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The pAblo·pCasso self-curing vector toolset for unconstrained cytidine and adenine base-editing in Gram-negative bacteria.

• Authors : Kozaeva E; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.; Nielsen ZS

Subjects: Gene Editing*/Gene Editing*/Gene Editing*/methods ; Gram-Negative Bacteria*/Gram-Negative Bacteria*/Gram-Negative Bacteria*/genetics ; Software*

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Feb 28; Vol. 52 (4), pp. e19.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Global analysis of the RNA–RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO.

• Authors : Hamrock, Fergal J¹ (AUTHOR); Ryan, Daniel² (AUTHOR); Shaibah, Ali¹ (AUTHOR)

Subjects: *NON-coding RNA; *GENETIC translation; *GRAM-negative bacteria

• Source: Nucleic Acids Research. 10/14/2024, Vol. 52 Issue 18, p11283-11300. 18p.

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tRNA queuosine modification is involved in biofilm formation and virulence in bacteria.

• Authors : Díaz-Rullo, Jorge¹ (AUTHOR) ; González-Pastor, José Eduardo¹ (AUTHOR)

Subjects: *VIRULENCE of bacteria; *TRANSFER RNA; *BIOFILMS

• Source: Nucleic Acids Research. 10/13/2023, Vol. 51 Issue 18, p9821-9837. 17p.

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Structural basis for the selective methylation of 5-carboxymethoxyuridine in tRNA modification.

• Authors : Yoo, Jaehun¹ (AUTHOR); Lee, Jangmin¹ (AUTHOR); Kim, Jungwook¹ (AUTHOR)

Subjects: *TRANSFER RNA; *METHYL formate; *METHYLATION

• Source: Nucleic Acids Research. 9/22/2023, Vol. 51 Issue 17, p9432-9441. 10p.

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Identification of a novel 5-aminomethyl-2-thiouridine methyltransferase in tRNA modification.

• Authors : Cho, Gyuhyeok¹ (AUTHOR); Lee, Jangmin¹ (AUTHOR); Kim, Jungwook¹ (AUTHOR)

Subjects: *TRANSFER RNA; *METHYLTRANSFERASES; *BASE pairs

• Source: Nucleic Acids Research. 2/28/2023, Vol. 51 Issue 4, p1971-1983. 13p.

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DksA is a conserved master regulator of stress response in Acinetobacter baumannii.

• Authors : Maharjan, Ram P¹ (AUTHOR); Sullivan, Geraldine J¹ (AUTHOR); Adams, Felise G² (AUTHOR)

Subjects: *ACINETOBACTER baumannii; *GRAM-negative bacteria; *FUNCTIONAL genomics

• Source: Nucleic Acids Research. 7/7/2023, Vol. 51 Issue 12, p6101-6119. 19p.

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Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism.

• Authors : Lomakin, Ivan B¹ (AUTHOR) ; Devarkar, Swapnil C² (AUTHOR); Patel, Shivali² (AUTHOR)

Subjects: *CUTIBACTERIUM acnes; *MYCOBACTERIUM smegmatis; *THERMUS thermophilus

• Source: Nucleic Acids Research. 4/11/2023, Vol. 51 Issue 6, p2915-2930. 16p.

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What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii.

• Authors : Pineau, Maïwenn¹ (AUTHOR); Martis B., Shiny¹ (AUTHOR); Forquet, Raphaël¹ (AUTHOR)

Subjects: *DNA topoisomerase I; *DNA topoisomerase II; *GRAM-negative bacteria

• Source: Nucleic Acids Research. 9/9/2022, Vol. 50 Issue 16, p9149-9161. 13p.

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PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria.

• Authors : Gardy, Jennifer L.; Spencer, Cory; Wang, Ke

• Source: Nucleic Acids Research. Jul2003, Vol. 31 Issue 13, p3613-3617. 5p.

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OMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteria.

• Authors : Tsirigos KD; Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Athens 15701, Greece.; Bagos PG

Subjects: Databases, Protein*; Bacterial Outer Membrane Proteins/Bacterial Outer Membrane Proteins/Bacterial Outer Membrane Proteins/*chemistry; Bacterial Outer Membrane Proteins/Bacterial Outer Membrane Proteins/Bacterial Outer Membrane Proteins/classification

• Source: Nucleic acids research [Nucleic Acids Res] 2011 Jan; Vol. 39 (Database issue), pp. D324-31. Date of Electronic Publication: 2010 Oct 15.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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