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Academic Journal

CORUM in 2024: protein complexes as drug targets.

  • Authors : Steinkamp R; Institute of Experimental Genetics, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Ingolstädter Landstr. 1, Neuherberg D-85764, Germany.; Tsitsiridis G

Subjects: Databases, Protein*; Humans ; Multiprotein Complexes/Multiprotein Complexes/Multiprotein Complexes/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D651-D657.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

TCR3d 2.0: expanding the T cell receptor structure database with new structures, tools and interactions.

  • Authors : Lin V; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, MD 20850, USA.

Subjects: Receptors, Antigen, T-Cell*/Receptors, Antigen, T-Cell*/Receptors, Antigen, T-Cell*/chemistry ; Receptors, Antigen, T-Cell*/Receptors, Antigen, T-Cell*/Receptors, Antigen, T-Cell*/immunology ; Receptors, Antigen, T-Cell*/Receptors, Antigen, T-Cell*/Receptors, Antigen, T-Cell*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D604-D608.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

SYNBIP 2.0: epitopes mapping, sequence expansion and scaffolds discovery for synthetic binding protein innovation.

  • Authors : Li Y; Chongqing Key Laboratory of Natural Product Synthesis and Drug Research, School of Pharmaceutical Sciences, Chongqing University, No. 55 South University Town Road, High-tech Zone, Chongqing 401331, China.; Li F

Subjects: Databases, Protein* ; Epitope Mapping*/Epitope Mapping*/Epitope Mapping*/methods; Models, Molecular

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D595-D603.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

InterPro: the protein sequence classification resource in 2025.

  • Authors : Blum M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.; Andreeva A

Subjects: Databases, Protein* ; Software* ; Sequence Analysis, Protein*

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D444-D456.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

BFVD-a large repository of predicted viral protein structures.

  • Authors : Kim RS; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; School of Biological Sciences, Seoul National University, Seoul, Republic of Korea.

Subjects: Databases, Protein* ; Viral Proteins*/Viral Proteins*/Viral Proteins*/chemistry ; Viral Proteins*/Viral Proteins*/Viral Proteins*/genetics

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D340-D347.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

The STRING database in 2025: protein networks with directionality of regulation.

  • Authors : Szklarczyk D; Department of Molecular Life Sciences, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, Amphipôle, Quartier UNIL-Sorge, 1015 Lausanne, Switzerland.

Subjects: Databases, Protein* ; Protein Interaction Mapping*; Humans

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D730-D737.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

dbPTM 2025 update: comprehensive integration of PTMs and proteomic data for advanced insights into cancer research.

  • Authors : Chung CR; Department of Computer Science and Information Engineering, National Central University, No. 300, Zhongda Rd., Zhongli Dist., Taoyuan City 320317, Taiwan.; Tang Y

Subjects: Neoplasms*/Neoplasms*/Neoplasms*/genetics ; Neoplasms*/Neoplasms*/Neoplasms*/metabolism ; Protein Processing, Post-Translational*

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D377-D386.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank.

  • Authors : Burley SK; Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.; Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.

Subjects: Databases, Protein* ; Models, Molecular* ; Protein Conformation*

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D564-D574.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

DNAproDB: an updated database for the automated and interactive analysis of protein-DNA complexes.

  • Authors : Mitra R; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA.; Cohen AS

Subjects: DNA*/DNA*/DNA*/chemistry ; DNA*/DNA*/DNA*/metabolism ; DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/metabolism

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D396-D402.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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Academic Journal

UniProt: the Universal Protein Knowledgebase in 2025.

Subjects: Databases, Protein* ; Molecular Sequence Annotation* ; Knowledge Bases*

  • Source: Nucleic acids research [Nucleic Acids Res] 2025 Jan 06; Vol. 53 (D1), pp. D609-D617.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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