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Comparative analysis of multiple DNA double-strand break repair pathways in CRISPR-mediated endogenous tagging.

• Authors : Tei C; Department of Physiological Chemistry, Graduate School of Pharmaceutical Sciences, The University of Tokyo, Bunkyo, Tokyo, Japan.; Hata S

Subjects: DNA Breaks, Double-Stranded* ; CRISPR-Cas Systems* ; DNA End-Joining Repair*

• Source: Communications biology [Commun Biol] 2025 May 13; Vol. 8 (1), pp. 749. Date of Electronic Publication: 2025 May 13.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Simple and robust in vivo engineering of plasmid DNA at any copy number in Escherichia coli.

• Authors : Sepulchro, Ana G. V.¹ (AUTHOR); Kozlowski, Hendrikje C. J.¹ (AUTHOR); Nørholm, Morten H. H.¹ (AUTHOR)

• Source: Communications Biology. 6/17/2025, Vol. 8 Issue 1, p1-11. 11p.

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TransBind allows precise detection of DNA-binding proteins and residues using language models and deep learning.

• Authors : Tahmid, Md Toki¹ (AUTHOR); Hasan, A.K.M. Mehedi¹ (AUTHOR); Bayzid, Md Shamsuzzoha¹ (AUTHOR)

• Source: Communications Biology. 4/5/2025, Vol. 8 Issue 1, p1-14. 14p.

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Exploring DNA degradation in situ and in museum storage through genomics and metagenomics.

• Authors : Eriksen AMH; Environmental Archaeology and Materials Science, National Museum of Denmark, 2800 Kgs, Lyngby, Denmark. .; Rodríguez JA

Subjects: Museums* ; Metagenomics*/Metagenomics*/Metagenomics*/methods ; Genomics*/Genomics*/Genomics*/methods

• Source: Communications biology [Commun Biol] 2025 Feb 10; Vol. 8 (1), pp. 210. Date of Electronic Publication: 2025 Feb 10.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Genome-wide mapping and quantification of DNA damage induced by catechol estrogens using Click-Probe-Seq and LC-MS 2 .

• Authors : Do QT; Department of Chemistry, National Cheng Kung University, Tainan, Taiwan.; Tzeng SF

Subjects: DNA Damage*/DNA Damage*/DNA Damage*/drug effects ; Estrogens, Catechol*/Estrogens, Catechol*/Estrogens, Catechol*/toxicity ; Chromosome Mapping*/Chromosome Mapping*/Chromosome Mapping*/methods

• Source: Communications biology [Commun Biol] 2025 Mar 11; Vol. 8 (1), pp. 357. Date of Electronic Publication: 2025 Mar 11.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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TEFM facilitates transition from RNA synthesis to DNA synthesis at H-strand replication origin of mtDNA.

• Authors : Matsuda, Shigeru^1,2 (AUTHOR); Nakayama, Masunari¹ (AUTHOR); Do, Yura¹ (AUTHOR)

• Source: Communications Biology. 2/8/2025, p1-13. 13p.

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Supervised and unsupervised deep learning-based approaches for studying DNA replication spatiotemporal dynamics.

• Authors : Ng-Kee-Kwong, Julian¹ (AUTHOR); Philps, Ben² (AUTHOR); Smith, Fiona N. C.² (AUTHOR)

• Source: Communications Biology. 2/26/2025, Vol. 8 Issue 1, p1-12. 12p.

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Independent evolution of satellite DNA sequences in homologous sex chromosomes of Neotropical armored catfish (Harttia).

• Authors : Sassi, Francisco de M. C.¹ (AUTHOR); Garrido-Ramos, Manuel A.² (AUTHOR); Utsunomia, Ricardo³ (AUTHOR)

• Source: Communications Biology. 3/30/2025, Vol. 8 Issue 1, p1-14. 14p.

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Identifying the "stripe" transcription factors and cooperative binding related to DNA methylation.

• Authors : Luo X; Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.; Zou Q

Subjects: DNA Methylation* ; Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics

• Source: Communications biology [Commun Biol] 2024 Oct 05; Vol. 7 (1), pp. 1265. Date of Electronic Publication: 2024 Oct 05.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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Maintaining mitochondrial DNA copy number mitigates ROS-induced oocyte decline and female reproductive aging.

• Authors : Long S; College of Life Sciences, Zhejiang University, Hangzhou, Zhejiang, China.; Westlake Laboratory of Life Sciences and Biomedicine, Hangzhou, Zhejiang, China.

Subjects: DNA, Mitochondrial*/DNA, Mitochondrial*/DNA, Mitochondrial*/genetics ; DNA, Mitochondrial*/DNA, Mitochondrial*/DNA, Mitochondrial*/metabolism ; Oocytes*/Oocytes*/Oocytes*/metabolism

• Source: Communications biology [Commun Biol] 2024 Oct 01; Vol. 7 (1), pp. 1229. Date of Electronic Publication: 2024 Oct 01.Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN:

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