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Semisynthetic simulation for microbiome data analysis

• Authors : Sankaran, Kris; Kodikara, Saritha; Li, Jingyi Jessica

Subjects: Biological Sciences; Genetics; Microbiome

• Source: Briefings in Bioinformatics. 26(1)

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Optimizing in silico drug discovery: simulation of connected differential expression signatures and applications to benchmarking

• Authors : Catalina Gonzalez Gomez; Manuel Rosa-Calatrava; Julien Fouret

Subjects: Benchmarking; Gene Expression Profiling; Drug Discovery

• Source: Brief Bioinform

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Pharmacoinformatics and molecular dynamics simulation-based phytochemical screening of neem plant (Azadiractha indica) against human cancer by targeting MCM7 protein.

• Authors : Ahammad F; Department of Biological Science, Faculty of science, King Abdul-Aziz University, Jeddah-21589, Saudi Arabia.; Laboratory of Computational Biology, Biological Solution Centre (BioSol Centre), Jashore-7408, Bangladesh.

Subjects: Molecular Dynamics Simulation*; Azadirachta/Azadirachta/Azadirachta/*chemistry ; Informatics/Informatics/Informatics/*methods

• Source: Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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BEERS2: RNA-Seq simulation through high fidelity in silico modeling.

• Authors : Brooks, Thomas G¹ (AUTHOR) ; Lahens, Nicholas F¹ (AUTHOR); Mrčela, Antonijo¹ (AUTHOR)

• Source: Briefings in Bioinformatics. May2024, Vol. 25 Issue 3, p1-8. 8p.

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SpatialcoGCN: deconvolution and spatial information–aware simulation of spatial transcriptomics data via deep graph co-embedding.

• Authors : Yin, Wang^1,2,3 (AUTHOR); Wan, You³ (AUTHOR); Zhou, Yuan^1,2 (AUTHOR)

• Source: Briefings in Bioinformatics. May2024, Vol. 25 Issue 3, p1-24. 24p.

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Tools for time-course simulation in systems biology: a brief overview.

• Authors : Musilova, Jana¹ (AUTHOR); Sedlar, Karel¹ (AUTHOR)

• Source: Briefings in Bioinformatics. Sep2021, Vol. 22 Issue 5, p1-15. 15p.

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RmsdXNA: RMSD prediction of nucleic acid-ligand docking poses using machine-learning method.

• Authors : Tan LH; Interdisciplinary Graduate School, Nanyang Technological University, 61 Nanyang Drive, 637335 Singapore, Singapore.; Kwoh CK

Subjects: Molecular Docking Simulation* ; Machine Learning* ; Nucleic Acids*/Nucleic Acids*/Nucleic Acids*/chemistry

• Source: Briefings in bioinformatics [Brief Bioinform] 2024 Mar 27; Vol. 25 (3).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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BEERS2: RNA-Seq simulation through high fidelityin silicomodeling

• Authors : Thomas G. Brooks; Nicholas F. Lahens; Antonijo Mrčela

Subjects: Genome; Sequence Analysis, RNA; Problem Solving Protocol

• Source: bioRxivBrief Bioinform

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Optimizing drug development in oncology by clinical trial simulation: Why and how?

• Authors : Gal, Jocelyn¹ ; Milano, Gérard²; Ferrero, Jean-Marc²

• Source: Briefings in Bioinformatics. Nov2018, Vol. 19 Issue 6, p1203-1217. 15p.

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Virtual screening and molecular dynamics simulation study of plant-derived compounds to identify potential inhibitors of main protease from SARS-CoV-2

• Authors : Mst Sharmin Sultana Shimu; Ekhtiar Rahman; Abu Saleh

Subjects: 0303 health sciences; 03 medical and health sciences; SARS-CoV-2

• Source: Briefings in Bioinformatics

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