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MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs.

• Authors : Hui-Ju Kao¹; Shun-Long Weng^2,3,4; Kai-Yao Huang^1,5

• Source: BMC Systems Biology. 12/21/2017, Vol. 11, p127-140. 14p.

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MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs

• Authors : Chien-Hsun Huang; Hui-Ju Kao; Justin Bo-Kai Hsu

Subjects: Models, Molecular; 0301 basic medicine; Systems biology

• Source: BMC Systems Biology, Vol 11, Iss S7, Pp 127-140 (2017)BMC Systems Biology

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Fusing gene expressions and transitive protein-protein interactions for inference of gene regulatory networks

• Authors : Wenting Liu; Jagath C. Rajapakse; School of Computer Science and Engineering

Subjects: Computer science; Systems biology; 0206 medical engineering

• Source: BMC Systems Biology, Vol 13, Iss S2, Pp 1-13 (2019)BMC Systems Biology

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SEQUOIA: significance enhanced network querying through context-sensitive random walk and minimization of network conductance

• Authors : Hyundoo Jeong; Byung-Jun Yoon

Subjects: 0301 basic medicine; Saccharomyces cerevisiae Proteins; Source code

• Source: BCBBMC Systems Biology

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The decrease of consistence probability: at the crossroad of catastrophic transition of a biological system

• Authors : Pei Chen; Yongjun Li

Subjects: 0301 basic medicine; Carcinoma, Hepatocellular; Pre-disease states

• Source: BMC Systems Biology

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A probabilistic context-free grammar for the detection of binding sites from a protein sequence

• Authors : Jean-Christophe Nebel; Witold Dyrka

Subjects: Sequence; Grammar; Computer science

• Source: BMC Systems Biology, Vol 1, Iss Suppl 1, p P78 (2007)

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DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data

• Authors : Marcel H. Schulz; Shan Zhong; Ziv Bar-Joseph

Subjects: Time Factors; Dynamic networks; Computer science

• Source: Schulz, Marcel H; Devanny, William E; Gitter, Anthony; Zhong, Shan; Ernst, Jason; & Bar-Joseph, Ziv. (2012). DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series

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A novel neural response algorithm for protein function prediction

• Authors : Junwen Wang; Quan-Wu Xiao; Hari Krishna Yalamanchili

Subjects: Computer science; Amino Acid Motifs; computer.software_genre

• Source: BMC Systems BiologyScopus-ElsevierBMC Systems Biology, Vol 6, Iss Suppl 1, p S19 (2012)

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Inferring gene regulatory networks from single-cell data: a mechanistic approach.

• Authors : Herbach, Ulysse^1,2,3; Bonnaffoux, Arnaud^1,2,4; Thibault Espinasse³

• Source: BMC Systems Biology. 11/21/2017, Vol. 11, p1-15. 15p.

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DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.

• Authors : Schulz, Marcel H.¹ ; Devanny, William E.²; Gitter, Anthony³

• Source: BMC Systems Biology. 2012, Vol. 6 Issue 1, p104-112. 9p. 1 Color Photograph, 4 Diagrams, 1 Chart, 1 Graph.

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