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Identification, visualization, statistical analysis and mathematical modeling of high-feedback loops in gene regulatory networks

• Authors : Benjamin Nordick; Tian Hong

Subjects: Gene regulatory network; Feedback loop; Multistability

• Source: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-21 (2021)

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Constructing and analysing dynamic models with modelbase v1.2.3: a software update.

• Authors : van Aalst, Marvin¹ (AUTHOR); Ebenhöh, Oliver^1,2 (AUTHOR); Matuszyńska, Anna^1,2 (AUTHOR)

• Source: BMC Bioinformatics. 4/20/2021, Vol. 22 Issue 1, p1-15. 15p.

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Exploring the dynamics and interplay of human papillomavirus and cervical tumorigenesis by integrating biological data into a mathematical model.

• Authors : Wu, Wenting¹ (AUTHOR); Song, Lei² (AUTHOR); Yang, Yongtao³ (AUTHOR)

• Source: BMC Bioinformatics. 5/5/2020 Supplement 7, Vol. 21, p1-8. 8p. 1 Diagram, 2 Charts, 5 Graphs.

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LinG3D: visualizing the spatio-temporal dynamics of clonal evolution

• Authors : Anjun Hu; Awino Maureiq E. Ojwang’; Kayode D. Olumoyin

Subjects: Lineage trees; 3D visualization; Spatial clone distribution

• Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-14 (2024)

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Mathematical modeling of the immune system recognition to mammary carcinoma antigen.

• Authors : Bianca, Carlo¹; Chiacchio, Ferdinando²; Pappalardo, Francesco³

• Source: BMC Bioinformatics. 2012, Vol. 13 Issue Suppl 17, p1-15. 15p. 1 Diagram, 2 Charts, 9 Graphs.

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lifex-ep: a robust and efficient software for cardiac electrophysiology simulations

• Authors : Pasquale Claudio Africa; Roberto Piersanti; Francesco Regazzoni

Subjects: Cardiac electrophysiology; Computational cardiology; High-performance computing

• Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-38 (2023)

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lifex-fiber: an open tool for myofibers generation in cardiac computational models

• Authors : Pasquale Claudio Africa; Roberto Piersanti; Marco Fedele

Subjects: Computational cardiology; High-performance computing; Cardiac fibers

• Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-32 (2023)

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Dynamic sensitivity analysis of biological systems.

• Authors : Wu Hsiung Wu¹ ; Feng Sheng Wang² ; Maw Shang Chang¹

• Source: BMC Bioinformatics. 2008 Supplement 12, Vol. 9, Special section p1-17. 17p. 4 Charts, 5 Graphs.

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An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments.

• Authors : Rantanen, Ari^1,2 ; Rousu, Juho¹ ; Jouhten, Paula³

• Source: BMC Bioinformatics. 2008, Vol. 9, Special section p1-19. 19p. 8 Diagrams, 2 Charts.

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PlantSimLab - a modeling and simulation web tool for plant biologists.

• Authors : Ha, S.¹ (AUTHOR) ; Dimitrova, E.² (AUTHOR) ; Hoops, S.³ (AUTHOR)

• Source: BMC Bioinformatics. 10/21/2019, Vol. 20 Issue 1, pN.PAG-N.PAG. 1p. 6 Color Photographs, 1 Diagram.

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