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Publication : bmc bioinformatics

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Academic Journal

Mathematical model of the cell signaling pathway based on the extended Boolean network model with a stochastic process.

Authors : Kim, Minsoo¹ (AUTHOR); Kim, Eunjung¹ (AUTHOR)

Source: BMC Bioinformatics. 11/30/2022, Vol. 23 Issue 1, p1-15. 15p.

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Academic Journal

kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models.

Authors : Carretero Chavez, Willow^1,2 (AUTHOR); Krantz, Marcus^3,4 (AUTHOR); Klipp, Edda³ (AUTHOR)

Source: BMC Bioinformatics. 6/12/2023, Vol. 24 Issue 1, p1-16. 16p.

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Academic Journal

Modeling of cell signaling pathways in macrophages by semantic networks.

Authors : Hsing, Michael¹ ; Bellenson, Joel L.² ; Shankey, Conor³

Source: BMC Bioinformatics. 2004, Vol. 5, p156-13. 13p. 2 Color Photographs, 5 Diagrams, 4 Charts.

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Academic Journal

Systematic calibration of a cell signaling network model.

Authors : Kyoung Ae Kim¹; Spencer, Sabrina L.^2,3; Albeck, John G.^2,3

Source: BMC Bioinformatics. 2010, Vol. 11, p202-215. 14p.

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Academic Journal

MOSBIE: a tool for comparison and analysis of rule-based biochemical models.

Authors : Wenskovitch Jr., John E.¹ (AUTHOR); Harris, Leonard A.² (AUTHOR); Tapia, Jose-Juan³ (AUTHOR)

Source: BMC Bioinformatics. 2014, Vol. 15 Issue 1, p1-16. 16p. 8 Diagrams, 2 Graphs.

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Academic Journal

pLMSNOSite: an ensemble-based approach for predicting protein S-nitrosylation sites by integrating supervised word embedding and embedding from pre-trained protein language model.

Authors : Pratyush, Pawel¹ (AUTHOR); Pokharel, Suresh¹ (AUTHOR); Saigo, Hiroto² (AUTHOR)

Source: BMC Bioinformatics. 2/8/2023, Vol. 24 Issue 1, p1-20. 20p.

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Academic Journal

Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm.

Authors : Martins, Pedro M.¹ (AUTHOR); Santos, Lucianna H.¹ (AUTHOR); Mariano, Diego¹ (AUTHOR)

Source: BMC Bioinformatics. 1/2/2021, Vol. 22 Issue 1, p1-20. 20p.

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Academic Journal

TopoFilter: a MATLAB package for mechanistic model identification in systems biology.

Authors : Rybiński, Mikołaj^1,2 (AUTHOR); Möller, Simon¹ (AUTHOR); Sunnåker, Mikael¹ (AUTHOR)

Source: BMC Bioinformatics. 1/29/2020, Vol. 21 Issue 1, p1-12. 12p. 4 Diagrams, 1 Chart, 2 Graphs.

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Academic Journal

pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems.

Authors : Arjunan, Satya N.V.¹ (AUTHOR) ; Miyauchi, Atsushi² (AUTHOR); Iwamoto, Kazunari¹ (AUTHOR)

Source: BMC Bioinformatics. 1/29/2020, Vol. 21 Issue 1, p1-21. 21p. 2 Diagrams, 5 Graphs.

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Academic Journal

PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites.

Authors : Liang Zou¹; Mang Wang¹; Yi Shen¹

Source: BMC Bioinformatics. 2013, Vol. 14 Issue 1, p1-8. 8p. 2 Charts, 4 Graphs.

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نتائج البحث

فلترة النتائج

Mathematical model of the cell signaling pathway based on the extended Boolean network model with a stochastic process.

kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models.

Modeling of cell signaling pathways in macrophages by semantic networks.

Systematic calibration of a cell signaling network model.

MOSBIE: a tool for comparison and analysis of rule-based biochemical models.

pLMSNOSite: an ensemble-based approach for predicting protein S-nitrosylation sites by integrating supervised word embedding and embedding from pre-trained protein language model.

Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm.

TopoFilter: a MATLAB package for mechanistic model identification in systems biology.

pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems.

PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites.

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