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Predicting microbial interactions with approaches based on flux balance analysis: an evaluation

• Authors : Clémence Joseph; Haris Zafeiropoulos; Kristel Bernaerts

Subjects: Flux balance analysis; Metabolic modelling; Microbial interactions

• Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-24 (2024)

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Predicting microbial interactions with approaches based on flux balance analysis: an evaluation.

• Authors : Joseph, Clémence¹ (AUTHOR); Zafeiropoulos, Haris¹ (AUTHOR); Bernaerts, Kristel² (AUTHOR)

• Source: BMC Bioinformatics. 1/23/2024, Vol. 25 Issue 1, p1-24. 24p.

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Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state

• Authors : Fletcher, Kyle; Han, Rongkui; Smilde, Diederik

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Ecology

• Source: BMC Bioinformatics. 23(1)

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Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells

• Authors : Bruno G. Galuzzi; Marco Vanoni; Chiara Damiani

Subjects: Metabolic networks; scRNA-seq; Flux balance analysis

• Source: BMC Bioinformatics, Vol 23, Iss S6, Pp 1-21 (2022)

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Combining denoising of RNA-seq data and flux balance analysis for cluster analysis of single cells.

• Authors : Galuzzi, Bruno G.^1,2 (AUTHOR); Vanoni, Marco^1,2 (AUTHOR); Damiani, Chiara^1,2 (AUTHOR)

• Source: BMC Bioinformatics. 10/25/2022 Suppl 6, Vol. 23, p1-20. 20p.

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On Sackin’s original proposal: the variance of the leaves’ depths as a phylogenetic balance index

• Authors : Tomás M. Coronado; Arnau Mir; Francesc Rosselló

Subjects: Phylogenetic tree; Balance index; Sackin index

• Source: BMC Bioinformatics, Vol 21, Iss 1, Pp 1-17 (2020)

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Variance of allele balance calculated from low coverage sequencing data infers departure from a diploid state

• Authors : Kyle Fletcher; Rongkui Han; Diederik Smilde

Subjects: Heterokaryosis; Polyploidy; Oomycete

• Source: BMC Bioinformatics, Vol 23, Iss 1, Pp 1-15 (2022)

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On Sackin’s original proposal: the variance of the leaves’ depths as a phylogenetic balance index.

• Authors : M. Coronado, Tomás^1,2 (AUTHOR); Mir, Arnau^1,2 (AUTHOR); Rosselló, Francesc^1,2 (AUTHOR)

• Source: BMC Bioinformatics. 4/23/2020 Supplement 3, Vol. 21, p1-17. 17p. 5 Diagrams, 3 Charts, 2 Graphs.

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Game of neutrophils: modeling the balance between apoptosis and necrosis

• Authors : Alva Presbitero; Emiliano Mancini; Filippo Castiglione

Subjects: Neutrophils; Evolutionary game theory; Apoptosis

• Source: BMC Bioinformatics, Vol 20, Iss S6, Pp 1-17 (2019)

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How to balance the bioinformatics data: pseudo-negative sampling

• Authors : Yongqing Zhang; Shaojie Qiao; Rongzhao Lu

Subjects: Imbalanced data; Pseudo-negative sampling; Pearson correlation coefficients

• Source: BMC Bioinformatics, Vol 20, Iss S25, Pp 1-13 (2019)

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