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Publication : bmc bioinformatics

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Academic Journal

Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone.

Authors : Roterman, Irena¹ (AUTHOR) ; Stapor, Katarzyna² (AUTHOR); Konieczny, Leszek³ (AUTHOR)

Source: BMC Bioinformatics. 11/7/2023, Vol. 24 Issue 1, p1-24. 24p.

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Academic Journal

Protein structure prediction based on particle swarm optimization and tabu search strategy.

Authors : Shuchun, Yu¹ (AUTHOR); Xianxiang, Li¹ (AUTHOR); Xue, Tian² (AUTHOR)

Source: BMC Bioinformatics. 8/23/2022, Vol. 23 Issue 1, p1-9. 9p.

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Academic Journal

Direct coupling analysis and the attention mechanism: Direct Coupling...: F. Caredda, A. Pagnani.

Authors : Caredda, Francesco¹ (AUTHOR) ; Pagnani, Andrea^1,2,3 (AUTHOR)

Source: BMC Bioinformatics. 2/6/2025, Vol. 26 Issue 1, p1-21. 21p.

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Academic Journal

A-Prot: protein structure modeling using MSA transformer.

Authors : Hong, Yiyu¹ (AUTHOR); Lee, Juyong^1,2 (AUTHOR) ; Ko, Junsu¹ (AUTHOR)

Source: BMC Bioinformatics. 3/16/2022, Vol. 23 Issue 1, p1-11. 11p.

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Academic Journal

Complementing sequence-derived features with structural information extracted from fragment libraries for protein structure prediction.

Authors : Liu, Siyuan^1,2,3 (AUTHOR); Wang, Tong³ (AUTHOR) ; Xu, Qijiang³ (AUTHOR)

Source: BMC Bioinformatics. 6/28/2021, Vol. 22 Issue 1, p1-18. 18p.

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Academic Journal

Prediction of mutation-induced protein stability changes based on the geometric representations learned by a self-supervised method.

Authors : Li, Shan Shan^1,2 (AUTHOR); Liu, Zhao Ming^2,3 (AUTHOR); Li, Jiao^1,2 (AUTHOR)

Source: BMC Bioinformatics. 8/28/2024, Vol. 25 Issue 1, p1-19. 19p.

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Academic Journal

MADOKA: an ultra-fast approach for large-scale protein structure similarity searching.

Authors : Deng, Lei¹ (AUTHOR); Zhong, Guolun¹ (AUTHOR); Liu, Chenzhe¹ (AUTHOR)

Source: BMC Bioinformatics. 12/24/2019 Supplement 25, Vol. 20, p1-10. 10p. 3 Diagrams, 5 Charts, 2 Graphs.

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Academic Journal

Decline of protein structure rigidity with interatomic distance.

Authors : Carugo, Oliviero^1,2 (AUTHOR)

Source: BMC Bioinformatics. 9/28/2021, Vol. 22 Issue 1, p1-12. 12p.

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Academic Journal

ProteinNet: a standardized data set for machine learning of protein structure.

Authors : AlQuraishi, Mohammed¹

Source: BMC Bioinformatics. 6/11/2019, Vol. 20 Issue 1, p1-10. 10p. 1 Diagram, 2 Charts, 5 Graphs.

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Academic Journal

ANDIS: an atomic angle- and distance-dependent statistical potential for protein structure quality assessment.

Authors : Yu, Zhongwang¹ ; Yao, Yuangen¹ ; Deng, Haiyou^1,2

Source: BMC Bioinformatics. 6/3/2019, Vol. 20 Issue 1, p1-11. 11p. 1 Diagram, 2 Charts, 3 Graphs.

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فلترة النتائج

Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone.

Protein structure prediction based on particle swarm optimization and tabu search strategy.

Direct coupling analysis and the attention mechanism: Direct Coupling...: F. Caredda, A. Pagnani.

A-Prot: protein structure modeling using MSA transformer.

Complementing sequence-derived features with structural information extracted from fragment libraries for protein structure prediction.

Prediction of mutation-induced protein stability changes based on the geometric representations learned by a self-supervised method.

MADOKA: an ultra-fast approach for large-scale protein structure similarity searching.

Decline of protein structure rigidity with interatomic distance.

ProteinNet: a standardized data set for machine learning of protein structure.

ANDIS: an atomic angle- and distance-dependent statistical potential for protein structure quality assessment.

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