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DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms.

• Authors : Shaw, Dipan; Chen, Hao; Xie, Minzhu

Subjects: Animals; Mice; Protein Isoforms

• Source: BMC bioinformatics. 22(1)

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DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms

• Authors : Dipan Shaw; Hao Chen; Minzhu Xie

Subjects: Computer applications to medicine. Medical informatics; R858-859.7; Biology (General)

• Source: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-22 (2021)

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Human-specific protein isoforms produced by novel splice sites in the human genome after the human-chimpanzee divergence.

• Authors : Kim, Dong Seon¹; Hahn, Yoonsoo¹

• Source: BMC Bioinformatics. 2012, Vol. 13 Issue 1, p299-306. 8p. 4 Diagrams.

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PEPPI: a peptidomic database of human protein isoforms for proteomics experiments.

• Authors : Zhou, Ao^1,2; Zhang, Fan^1,2; Chen, Jake Y.^1,2,3

• Source: BMC Bioinformatics. 2010 Supplement 6, Vol. 11, p1-13. 13p.

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ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs.

• Authors : Westrin KJ; Science for Life Laboratory, Department of Gene Technology, KTH Royal Institute of Technology, 171 65, Solna, Sweden.; Kretzschmar WW

Subjects: Transcriptome* ; High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/High-Throughput Nucleotide Sequencing*/methods; Sequence Analysis

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Feb 01; Vol. 25 (1), pp. 54. Date of Electronic Publication: 2024 Feb 01.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line

• Authors : Weinholdt, Claus; Wichmann, Henri; Kotrba, Johanna

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Brain Disorders

• Source: BMC Bioinformatics. 20(1)

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Human-specific protein isoforms produced by novel splice sites in the human genome after the human-chimpanzee divergence

• Authors : Yoonsoo Hahn; Dong Seon Kim

Subjects: Proteomics; Protein isoform; Gene isoform

• Source: BMC Bioinformatics, Vol 13, Iss 1, p 299 (2012)BMC Bioinformatics

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PEPPI: a peptidomic database of human protein isoforms for proteomics experiments

• Authors : Fan Zhang; Jake Y. Chen; Ao Zhou

Subjects: Proteomics; Gene isoform; Protein isoform

• Source: BMC Bioinformatics

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APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data.

• Authors : Fahmi NA; Department of Computer Science, University of Central Florida, 4000 Central Florida Blvd, Orlando, FL, 32816, USA.; Ahmed KT

Subjects: MicroRNAs*/MicroRNAs*/MicroRNAs*/metabolism ; Polyadenylation*; 3' Untranslated Regions/3' Untranslated Regions/3' Untranslated Regions/genetics

• Source: BMC bioinformatics [BMC Bioinformatics] 2022 Sep 28; Vol. 23 (Suppl 3), pp. 396. Date of Electronic Publication: 2022 Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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NSMAP: a method for spliced isoforms identification and quantification from RNA-Seq.

• Authors : Xia Z; Department of Radiology, The Methodist Hospital Research Institute, Houston, TX 77030, USA.; Wen J

Subjects: Alternative Splicing* ; Models, Genetic* ; Software*

• Source: BMC bioinformatics [BMC Bioinformatics] 2011 May 16; Vol. 12, pp. 162. Date of Electronic Publication: 2011 May 16.Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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