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  • 1-10 ل  381 نتائج ل ""Molecular Sequence Annotation""
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Academic Journal

Improvements in viral gene annotation using large language models and soft alignments.

  • Authors : Harrigan WL; Hawai'i Institute of Marine Biology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.; Ferrell BD

Subjects: Molecular Sequence Annotation*/Molecular Sequence Annotation*/Molecular Sequence Annotation*/methods ; Sequence Alignment*/Sequence Alignment*/Sequence Alignment*/methods ; Algorithms*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Apr 25; Vol. 25 (1), pp. 165. Date of Electronic Publication: 2024 Apr Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Impact of gene annotation choice on the quantification of RNA-seq data.

  • Authors : Chisanga D; Olivia Newton-John Cancer Research Institute, Melbourne, Australia.; School of Cancer Medicine, La Trobe University, Melbourne, Australia.

Subjects: Molecular Sequence Annotation*; Base Sequence ; Humans

  • Source: BMC bioinformatics [BMC Bioinformatics] 2022 Mar 30; Vol. 23 (1), pp. 107. Date of Electronic Publication: 2022 Mar Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

Graph embeddings on gene ontology annotations for protein-protein interaction prediction.

  • Authors : Zhong X; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China. .; Rajapakse JC

Subjects: Gene Ontology* ; Molecular Sequence Annotation*; Protein Interaction Mapping/Protein Interaction Mapping/Protein Interaction Mapping/*methods

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Dec 16; Vol. 21 (Suppl 16), pp. 560. Date of Electronic Publication: 2020Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

PALMER: improving pathway annotation based on the biomedical literature mining with a constrained latent block model.

  • Authors : Nam JH; Department of Public Health Sciences, Medical University of South Carolina, Charleston, SC, USA.; School of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.

Subjects: Algorithms* ; Data Mining* ; Models, Theoretical*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Oct 02; Vol. 21 (1), pp. 432. Date of Electronic Publication: 2020 Oct Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.

  • Authors : Kondratenko Y; Center for Algorithmic Biotechnology, Institute for Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia, 199004. .; Korobeynikov A

Subjects: High-Throughput Nucleotide Sequencing* ; Molecular Sequence Annotation* ; Software*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 Jul 24; Vol. 21 (Suppl 12), pp. 303. Date of Electronic Publication: 2020Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

VADR: validation and annotation of virus sequence submissions to GenBank.

  • Authors : Schäffer AA; Cancer Data Science Laboratory National, Cancer Insitute, National Institutes of Health, Bethesda, 20892, MD, USA.; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, 20894, MD, USA.

Subjects: Betacoronavirus*/Betacoronavirus*/Betacoronavirus*/genetics ; Coronavirus Infections*/Coronavirus Infections*/Coronavirus Infections*/genetics ; Databases, Nucleic Acid*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 May 24; Vol. 21 (1), pp. 211. Date of Electronic Publication: 2020 May Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments.

  • Authors : Ekiz HA; Division of Microbiology and Immunology, Department of Pathology, University of Utah, 15 N. Medical Dr. East, JMRB, Salt Lake City, UT, 84112, USA. .; Huntsman Cancer Institute, University of Utah, 2000 Circle of Hope Dr, Salt Lake City, UT, 84112, USA. .

Subjects: Internet* ; Molecular Sequence Annotation* ; Sequence Analysis, RNA*

  • Source: BMC bioinformatics [BMC Bioinformatics] 2020 May 15; Vol. 21 (1), pp. 191. Date of Electronic Publication: 2020 May Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

KEGG orthology prediction of bacterial proteins using natural language processing.

  • Authors : Chen J; School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China.; Jiangsu Provincial Engineering Laboratory of Pattern Recognition and Computing Intelligence, Jiangnan University, Wuxi, China.

Subjects: Natural Language Processing* ; Bacterial Proteins*; Genome

  • Source: BMC bioinformatics [BMC Bioinformatics] 2024 Apr 11; Vol. 25 (1), pp. 146. Date of Electronic Publication: 2024 Apr Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Academic Journal

A probabilistic method for leveraging functional annotations to enhance estimation of the temporal order of pathway mutations during carcinogenesis.

  • Authors : Wang M; Department of Statistics, University of Kentucky, Lexington, USA.; Yu T

Subjects: Molecular Sequence Annotation* ; Probability*; Carcinogenesis/Carcinogenesis/Carcinogenesis/*genetics

  • Source: BMC bioinformatics [BMC Bioinformatics] 2019 Dec 02; Vol. 20 (1), pp. 620. Date of Electronic Publication: 2019 Dec Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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  • 1-10 ل  381 نتائج ل ""Molecular Sequence Annotation""