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SimplySmart_v1, a new tool for the analysis of DNA damage optimized in primary neuronal cultures.

• Authors : Koirala, Sushma¹ (AUTHOR); Sharma, Harman¹ (AUTHOR); Chew, Yee Lian¹ (AUTHOR)

• Source: BMC Bioinformatics. 10/1/2024, Vol. 25 Issue 1, p1-18. 18p.

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Efficient and low-complexity variable-to-variable length coding for DNA storage.

• Authors : Gao, Yunfei¹ (AUTHOR); No, Albert² (AUTHOR)

• Source: BMC Bioinformatics. 10/1/2024, Vol. 25 Issue 1, p1-14. 14p.

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MethylSeqLogo: DNA methylation smart sequence logos.

• Authors : Hsu FM; Department of Molecular Cell and Developmental Biology, University of California, Los Angeles, USA.; Horton P

Subjects: DNA Methylation*/DNA Methylation*/DNA Methylation*/genetics; Binding Sites ; Sequence Analysis, DNA/Sequence Analysis, DNA/Sequence Analysis, DNA/methods

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Oct 09; Vol. 25 (Suppl 2), pp. 326. Date of Electronic Publication: 2024 Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Distinguishing word identity and sequence context in DNA language models.

• Authors : Sanabria M; Biomedical Genomics, Biotechnology Center, Center for Molecular and Cellular Bioengineering, Technische Universitat Dresden, Dresden, Germany.; Hirsch J

Subjects: DNA*/DNA*/DNA*/chemistry; Humans ; Genome, Human

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Sep 13; Vol. 25 (1), pp. 301. Date of Electronic Publication: 2024 Sep Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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StackDPP: a stacking ensemble based DNA-binding protein prediction model.

• Authors : Ahmed SH; Department of CSE, BUET, ECE Building, West Palashi, Dhaka, 1000, Bangladesh.; Bose DB

Subjects: DNA-Binding Proteins*/DNA-Binding Proteins*/DNA-Binding Proteins*/metabolism ; Algorithms*; Software

• Source: BMC bioinformatics [BMC Bioinformatics] 2024 Mar 14; Vol. 25 (1), pp. 111. Date of Electronic Publication: 2024 Mar Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105

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Machine learning based DNA melt curve profiling enables automated novel genotype detection.

• Authors : Boussina, Aaron¹ (AUTHOR); Langouche, Lennart² (AUTHOR); Obirieze, Augustine C.² (AUTHOR)

• Source: BMC Bioinformatics. 5/10/2024, Vol. 25 Issue 1, p1-13. 13p.

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TreeWave: command line tool for alignment-free phylogeny reconstruction based on graphical representation of DNA sequences and genomic signal processing.

• Authors : Boumajdi, Nasma¹ (AUTHOR); Bendani, Houda¹ (AUTHOR); Belyamani, Lahcen^2,3,4 (AUTHOR)

• Source: BMC Bioinformatics. 11/27/2024, Vol. 25 Issue 1, p1-17. 17p.

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DNA-protein quasi-mapping for rapid differential gene expression analysis in non-model organisms.

• Authors : Santiago, Kyle Christian L.^1,2 (AUTHOR); Shrestha, Anish M. S.^1,2 (AUTHOR)

• Source: BMC Bioinformatics. 10/24/2024, Vol. 25 Issue 1, p1-14. 14p.

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SimplySmart_v1, a new tool for the analysis of DNA damage optimized in primary neuronal cultures

• Authors : Sushma Koirala; Harman Sharma; Yee Lian Chew

Subjects: DNA damage foci; Neurodegeneration; DNA damage in neurons

• Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-18 (2024)

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MethylSeqLogo: DNA methylation smart sequence logos

• Authors : Fei-Man Hsu; Paul Horton

Subjects: DNA methylation; Transcription Factor Binding Sites; Visualization

• Source: BMC Bioinformatics, Vol 25, Iss S2, Pp 1-14 (2024)

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