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Academic Journal

Impact of Multi-Factor Features on Protein Secondary Structure Prediction.

Authors : Dong B; College of Computer and Control Engineering, Northeast Forestry University, Harbin 150040, China.; Liu Z

Subjects: Protein Structure, Secondary* ; Proteins*/Proteins*/Proteins*/chemistry ; Machine Learning*

Source: Biomolecules [Biomolecules] 2024 Sep 13; Vol. 14 (9). Date of Electronic Publication: 2024 Sep 13.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Kinetic Isotope Effect in the Unfolding of a Protein Secondary Structure: Calculations for Beta-Sheet Polyglycine Dimers as a Model.

Authors : Yanshin AO; Institute of Chemical Kinetics and Combustion SB RAS, 3 Institutskaya Street, Novosibirsk 630090, Russia.; Department of Physics, Novosibirsk State University, 1 Pirogova Street, Novosibirsk 630090, Russia.

Subjects: Protein Unfolding* ; Peptides*/Peptides*/Peptides*/chemistry; Kinetics

Source: Biomolecules [Biomolecules] 2025 Jan 09; Vol. 15 (1). Date of Electronic Publication: 2025 Jan 09.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Discovering the Ultimate Limits of Protein Secondary Structure Prediction.

Authors : Ho CT; Institute of Bioinformatics and Systems Biology, National Yang Ming Chiao Tung University, Hsinchu 300, Taiwan.; Huang YW

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Algorithms* ; Protein Structure, Secondary*

Source: Biomolecules [Biomolecules] 2021 Nov 03; Vol. 11 (11). Date of Electronic Publication: 2021 Nov 03.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

The Future of Protein Secondary Structure Prediction Was Invented by Oleg Ptitsyn.

Authors : Rademaker D; Centre for Molecular and Biomolecular Informatics (CMBI), Radboudumc, 6525 GA Nijmegen, The Netherlands.; van Dijk J

Subjects: Protein Structure, Secondary*; Biochemistry/Biochemistry/Biochemistry/*history ; Computational Biology/Computational Biology/Computational Biology/*history Ptitsyn O

Source: Biomolecules [Biomolecules] 2020 Jun 16; Vol. 10 (6). Date of Electronic Publication: 2020 Jun 16.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Mathematical and Machine Learning Approaches for Classification of Protein Secondary Structure Elements from Cα Coordinates.

Authors : Sekmen A; Department of Computer Science, Tennessee State University, Nashville, TN 37209, USA.; Al Nasr K

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Machine Learning*; Protein Structure, Secondary

Source: Biomolecules [Biomolecules] 2023 May 31; Vol. 13 (6). Date of Electronic Publication: 2023 May 31.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Structure-Activity Relationship of 5-mer Catalytides, GSGYR and RYGSG.

Authors : Nakamura R; Laboratory of Pharmacology, School of Medicine, Koch University, Nankoku 783-0047, Japan.; O-Force Co., Ltd., 3454 Irino Kuroshio-cho, Hata-gun, Kochi 789-1931, Japan.

Subjects: Amyloid beta-Peptides*/Amyloid beta-Peptides*/Amyloid beta-Peptides*/metabolism ; Molecular Dynamics Simulation*; Proteolysis

Source: Biomolecules [Biomolecules] 2022 Nov 27; Vol. 12 (12). Date of Electronic Publication: 2022 Nov 27.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Biochemical and Structural Characterization of Chi-Class Glutathione Transferases: A Snapshot on the Glutathione Transferase Encoded by sll0067 Gene in the Cyanobacterium Synechocystis sp. Strain PCC 6803.

Authors : Mocchetti E; Université de Lorraine, CNRS, CRM2, F-54000 Nancy, France.; Morette L

Subjects: Glutathione Transferase*/Glutathione Transferase*/Glutathione Transferase*/metabolism ; Synechocystis*/Synechocystis*/Synechocystis*/genetics ; Synechocystis*/Synechocystis*/Synechocystis*/metabolism

Source: Biomolecules [Biomolecules] 2022 Oct 13; Vol. 12 (10). Date of Electronic Publication: 2022 Oct 13.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Local Backbone Geometry Plays a Critical Role in Determining Conformational Preferences of Amino Acid Residues in Proteins.

Authors : Balasco N; Institute of Molecular Biology and Pathology, CNR c/o Dep. Chemistry, University of Rome Sapienza, P.le A. Moro 5, 00185 Rome, Italy.; Esposito L

Subjects: Amino Acids*/Amino Acids*/Amino Acids*/chemistry ; Proteins*/Proteins*/Proteins*/chemistry; Databases, Protein

Source: Biomolecules [Biomolecules] 2022 Aug 26; Vol. 12 (9). Date of Electronic Publication: 2022 Aug 26.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Benchmarking the Accuracy of AlphaFold 2 in Loop Structure Prediction.

Authors : Stevens AO; Department of Chemistry and Chemical Biology, University of New Mexico, Albuquerque, NM 87131, USA.; He Y

Subjects: Proteins*/Proteins*/Proteins*/chemistry; Models, Molecular ; Protein Conformation

Source: Biomolecules [Biomolecules] 2022 Jul 14; Vol. 12 (7). Date of Electronic Publication: 2022 Jul 14.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

High Energy Channeling and Malleable Transition States: Molecular Dynamics Simulations and Free Energy Landscapes for the Thermal Unfolding of Protein U1A and 13 Mutants.

Authors : Dang NL; Department of Chemistry and Molecular Biophysics Program, Wesleyan University, Middletown, CT 06459, USA.; Baranger AM

Subjects: Molecular Dynamics Simulation* ; Protein Folding*; Protein Structure, Secondary

Source: Biomolecules [Biomolecules] 2022 Jul 04; Vol. 12 (7). Date of Electronic Publication: 2022 Jul 04.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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نتائج البحث

فلترة النتائج

Impact of Multi-Factor Features on Protein Secondary Structure Prediction.

Kinetic Isotope Effect in the Unfolding of a Protein Secondary Structure: Calculations for Beta-Sheet Polyglycine Dimers as a Model.

Discovering the Ultimate Limits of Protein Secondary Structure Prediction.

The Future of Protein Secondary Structure Prediction Was Invented by Oleg Ptitsyn.

Mathematical and Machine Learning Approaches for Classification of Protein Secondary Structure Elements from Cα Coordinates.

Structure-Activity Relationship of 5-mer Catalytides, GSGYR and RYGSG.

Biochemical and Structural Characterization of Chi-Class Glutathione Transferases: A Snapshot on the Glutathione Transferase Encoded by sll0067 Gene in the Cyanobacterium Synechocystis sp. Strain PCC 6803.

Local Backbone Geometry Plays a Critical Role in Determining Conformational Preferences of Amino Acid Residues in Proteins.

Benchmarking the Accuracy of AlphaFold 2 in Loop Structure Prediction.

High Energy Channeling and Malleable Transition States: Molecular Dynamics Simulations and Free Energy Landscapes for the Thermal Unfolding of Protein U1A and 13 Mutants.

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