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BetaAlign: a deep learning approach for multiple sequence alignment.

• Authors : Dotan, Edo; Wygoda, Elya; Ecker, Noa

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Benchmarking long-read genome sequence alignment tools for human genomics applications.

• Authors : LoTempio, Jonathan; Delot, Emmanuele; Vilain, Eric

Subjects: Benchmark; Genome alignment; Genomic medicine

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TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers

• Authors : Walia, Sumit; Ye, Cheng; Bera, Arkid

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Genetics

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RAPIDx: High-Performance ReRAM Processing In-Memory Accelerator for Sequence Alignment

• Authors : Xu, Weihong; Gupta, Saransh; Moshiri, Niema

Subjects: Engineering; Electrical Engineering; Electronics

• Source: IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems. 42(10)

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ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes

• Authors : Moshiri, Niema

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Genetics

• Source: Bioinformatics. 37(5)

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ADEPT: a domain independent sequence alignment strategy for gpu architectures

• Authors : Awan, Muaaz G; Deslippe, Jack; Buluc, Aydin

Subjects: Biological Sciences; Bioinformatics and Computational Biology; Human Genome

• Source: BMC Bioinformatics. 21(1)

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ADEPT: a domain independent sequence alignment strategy for gpu architectures.

• Authors : Awan, Muaaz G; Deslippe, Jack; Buluc, Aydin

Subjects: Humans; Sequence Alignment; Computational Biology

• Source: BMC bioinformatics. 21(1)

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GPU accelerated partial order multiple sequence alignment for long reads self-correction

• Authors : Peverelli, Francesco; Di Tucci, Lorenzo; Santambrogio, Marco D

Subjects: Networking and Information Technology R&D (NITRD); Biotechnology; Bioengineering

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GPU accelerated partial order multiple sequence alignment for long reads self-correction

• Authors : Peverelli, F; Tucci, LD; Santambrogio, MD

Subjects: Biotechnology; Bioengineering; Human Genome

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Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices

• Authors : Selvitopi, Oguz; Ekanayake, Saliya; Guidi, Giulia

Subjects: Biochemistry and Cell Biology; Bioinformatics and Computational Biology; Biological Sciences

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