نتائج البحث

Asymmetry of Motif Conservation Within Their Homotypic Pairs Distinguishes DNA-Binding Domains of Target Transcription Factors in ChIP-Seq Data.

• Authors : Levitsky VG; Department of System Biology, Institute of Cytology and Genetics, Novosibirsk 630090, Russia.; Department of Natural Science, Novosibirsk State University, Novosibirsk 630090, Russia.

Subjects: Transcription Factors*/Transcription Factors*/Transcription Factors*/metabolism ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics ; Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/methods

• Source: International journal of molecular sciences [Int J Mol Sci] 2025 Jan 04; Vol. 26 (1). Date of Electronic Publication: 2025 Jan 04.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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High-throughput capture of transcription factor-driven epigenome dynamics using PHILO ChIP-seq.

• Authors : Choudhary A; Waksman Institute of Microbiology, Department of Plant Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA.; Ammari M

Subjects: Arabidopsis*/Arabidopsis*/Arabidopsis*/genetics ; Arabidopsis*/Arabidopsis*/Arabidopsis*/metabolism ; Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/Chromatin Immunoprecipitation Sequencing*/methods

• Source: Nucleic acids research [Nucleic Acids Res] 2024 Dec 11; Vol. 52 (22), pp. e105.Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN:

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ChIP-Seq Analysis of AtfA Interactions in Aspergillus flavus Reveals Its Involvement in Aflatoxin Metabolism and Virulence Under Oxidative Stress.

• Authors : Peng S; School of Food Science and Engineering, Shaanxi University of Science and Technology, Xi'an 710021, China.; Hu L

Subjects: Aspergillus flavus*/Aspergillus flavus*/Aspergillus flavus*/pathogenicity ; Aspergillus flavus*/Aspergillus flavus*/Aspergillus flavus*/metabolism ; Aspergillus flavus*/Aspergillus flavus*/Aspergillus flavus*/genetics

• Source: International journal of molecular sciences [Int J Mol Sci] 2024 Nov 14; Vol. 25 (22). Date of Electronic Publication: 2024 Nov 14.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Unveiling Novel Mechanism of CIDEB in Fatty Acid Synthesis Through ChIP-Seq and Functional Analysis in Dairy Goat.

• Authors : He Q; Shaanxi Key Laboratory of Molecular Biology for Agriculture, College of Animal Science and Technology, Northwest A&F University, Yangling, Xianyang 712100, China.; Yao W

Subjects: Goats*/Goats*/Goats*/genetics ; Goats*/Goats*/Goats*/metabolism ; Fatty Acids*/Fatty Acids*/Fatty Acids*/metabolism

• Source: International journal of molecular sciences [Int J Mol Sci] 2024 Oct 21; Vol. 25 (20). Date of Electronic Publication: 2024 Oct 21.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Allele-specific binding variants causing ChIP-seq peak height of histone modification are not enriched in expression QTL annotations.

• Authors : Ghoreishifar M; Agriculture Victoria Research, AgriBio Centre for AgriBioscience, Bundoora, VIC, 3083, Australia. .; School of Applied Systems Biology, La Trobe University, Bundoora, VIC, 3083, Australia. .

Subjects: Quantitative Trait Loci* ; Histones*/Histones*/Histones*/genetics ; Histones*/Histones*/Histones*/metabolism

• Source: Genetics, selection, evolution : GSE [Genet Sel Evol] 2024 Jun 27; Vol. 56 (1), pp. 50. Date of Electronic Publication: 2024 Jun 27.Publisher: BioMed Central Country of Publication: France NLM ID: 9114088 Publication Model: Electronic Cited Medium: Internet ISSN: 1297-9686

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RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats.

• Authors : Choudalakis M; Department of Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, 70569, Stuttgart, Germany.; Bashtrykov P

• Source: Mobile DNA [Mob DNA] 2024 Apr 03; Vol. 15 (1), pp. 6. Date of Electronic Publication: 2024 Apr 03.Publisher: BioMed Central Country of Publication: England NLM ID: 101519891 Publication Model: Electronic Cited Medium: Print ISSN: 1759-8753

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Peak Scores Significantly Depend on the Relationships between Contextual Signals in ChIP-Seq Peaks.

• Authors : Vishnevsky OV; Institute of Cytology and Genetics, 630090 Novosibirsk, Russia.; Department of Natural Science, Novosibirsk State University, 630090 Novosibirsk, Russia.

Subjects: Chromatin Immunoprecipitation Sequencing* ; Transcription Factors*/Transcription Factors*/Transcription Factors*/genetics; Chromatin Immunoprecipitation

• Source: International journal of molecular sciences [Int J Mol Sci] 2024 Jan 13; Vol. 25 (2). Date of Electronic Publication: 2024 Jan 13.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Elucidating disease-associated mechanisms triggered by pollutants via the epigenetic landscape using large-scale ChIP-Seq data.

• Authors : Zou Z; Department of Drug Discovery Medicine, Kyoto University Graduate School of Medicine, 53 Shogoin Kawahara-Cho, Sakyo-Ku, Kyoto, 606-8507, Japan.; Yoshimura Y

Subjects: Environmental Pollutants*/Environmental Pollutants*/Environmental Pollutants*/toxicity; Humans ; Animals

• Source: Epigenetics & chromatin [Epigenetics Chromatin] 2023 Sep 25; Vol. 16 (1), pp. 34. Date of Electronic Publication: 2023 Sep 25.Publisher: BioMed Central Country of Publication: England NLM ID: 101471619 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-8935

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Meta-analysis of integrated ChIP-seq and transcriptome data revealed genomic regions affected by estrogen receptor alpha in breast cancer.

• Authors : Piryaei Z; Department of Bioinformatics, Kish International Campus University of Tehran, Kish, Iran.; Laboratory of Complex Biological Systems and Bioinformatics (CBB), Department of Bioinformatics, Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran.

Subjects: Estrogen Receptor alpha*/Estrogen Receptor alpha*/Estrogen Receptor alpha*/genetics ; Breast Neoplasms*/Breast Neoplasms*/Breast Neoplasms*/genetics; Humans

• Source: BMC medical genomics [BMC Med Genomics] 2023 Sep 15; Vol. 16 (1), pp. 219. Date of Electronic Publication: 2023 Sep 15.Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium: Internet ISSN: 1755-8794

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Analyzing histone ChIP-seq data with a bin-based probability of being signal.

• Authors : Hecht V; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America.; Dong K

Subjects: Histones*/Histones*/Histones*/genetics ; Histones*/Histones*/Histones*/metabolism ; Chromatin Immunoprecipitation Sequencing*

• Source: PLoS computational biology [PLoS Comput Biol] 2023 Oct 20; Vol. 19 (10), pp. e1011568. Date of Electronic Publication: 2023 Oct 20 (Print Publication: 2023).Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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