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Parameterizing sequence alignment with an explicit evolutionary model

• Authors : Rivas, Elena; Eddy, Sean

Subjects: Evolutionary models; Hidden Markov models; Insertions and deletions

• Source: Rivas, Elena, and Sean R. Eddy. 2015. “Parameterizing sequence alignment with an explicit evolutionary model.” BMC Bioinformatics 16

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Grammar-Based Distance in Progressive Multiple Sequence Alignment

• Authors : Russell, David J; Otu, Hasan H; Sayood, Khalid

• Source: Russell, David J., Hasan H. Otu, and Khalid Sayood. 2008. Grammar-based distance in progressive multiple sequence alignment. BMC

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BALSA: Bayesian algorithm for local sequence alignment

• Authors : Webb, B.-J. M.; Liu, Jun; Lawrence, Charles E.

• Source: Webb, B.-J. M. 2002. “BALSA: Bayesian Algorithm for Local Sequence Alignment.” Nucleic Acids Research 30 (5) (March 1): 1268–1277.

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Population-specific design of de-immunized protein biotherapeutics

• Authors : Schubert, Benjamin; Marks, Debora; Schärfe, Charlotta

Subjects: Biology and Life Sciences; Physiology; Immune Physiology

• Source: Schubert, Benjamin, Charlotta Schärfe, Pierre Dönnes, Thomas Hopf, Debora Marks, and Oliver Kohlbacher. 2018. “Population-specific design of de-immunized protein biotherapeutics.” PLoS

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Exploiting glycan topography for computational design of Env glycoprotein antigenicity

• Authors : Yu, Wen-Han; Karsten, Christina; Gunn, Bronwyn

Subjects: Biology and Life Sciences; Physiology; Immune Physiology

• Source: Yu, W., P. Zhao, M. Draghi, C. Arevalo, C. B. Karsten, T. J. Suscovich, B. Gunn, et al. 2018. “Exploiting glycan topography for computational design of Env glycoprotein antigenicity.” PLoS

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ViroFind: A novel target-enrichment deep-sequencing platform reveals a complex JC virus population in the brain of PML patients

• Authors : Chalkias, Spyros; Mazaika, Erica; Dang, Xin

Subjects: Biology and life sciences; Organisms; Viruses

• Source: Chalkias, Spyros, Joshua M. Gorham, Erica Mazaika, Michael Parfenov, Xin Dang, Steve DePalma, David McKean, Christine E. Seidman, Jonathan G. Seidman, and Igor J. Koralnik. 2018. “ViroFind: A novel

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A putative lateral flagella of the cystic fibrosis pathogen Burkholderia dolosa regulates swimming motility and host cytokine production

• Authors : Roux, Damien; Clark, Bradley S.; Weatherholt, Molly

Subjects: Biology and Life Sciences; Cell Biology; Cellular Structures and Organelles

• Source: Roux, Damien, Matthew Schaefers, Bradley S. Clark, Molly Weatherholt, Diane Renaud, David Scott, John J. LiPuma, Gregory Priebe, Craig Gerard, and Deborah R. Yoder-Himes. 2018. “A putative lateral

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Lower pre-ART intra-participant HIV-1 pol diversity may not be associated with virologic failure in adults

• Authors : Kearney, Mary F.; Spindler, Jonathan; Wiegand, Ann

Subjects: Biology and Life Sciences; Microbiology; Medical Microbiology

• Source: Kearney, Mary F., Jonathan Spindler, Ann Wiegand, Wei Shao, Richard Haubrich, Sharon Riddler, Christina M. Lalama, Michael D. Hughes, John M. Coffin, and John W. Mellors. 2018. “Lower pre-ART

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Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients

• Authors : Moss, Eli L.; Falconer, Shannon B.; Tkachenko, Ekaterina

Subjects: Biology and Life Sciences; Microbiology; Microbial Control

• Source: Moss, Eli L., Shannon B. Falconer, Ekaterina Tkachenko, Mingjie Wang, Hannah Systrom, Jasmin Mahabamunuge, David A. Relman, Elizabeth L. Hohmann, and Ami S. Bhatt. 2017. “Long-term taxonomic and

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Nucleotide-time alignment for molecular recorders

• Authors : Cybulski, Thaddeus R.; Boyden, Edward S.; Tyo, Keith E. J.

Subjects: Biology and Life Sciences; Neuroscience; Neuronal Tuning

• Source: Cybulski, Thaddeus R., Edward S. Boyden, George M. Church, Keith E. J. Tyo, and Konrad P. Kording. 2017. “Nucleotide-time alignment for molecular recorders.” PLoS

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