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A general approach to visualize protein binding and DNA conformation without protein labelling

• Authors : Song, Dan; Graham, Thomas G. W.; Loparo, Joseph

• Source: Song, Dan, Thomas G. W. Graham, and Joseph J. Loparo. 2016. “A general approach to visualize protein binding and DNA conformation

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UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein–DNA interactions

• Authors : Hume, Maxwell A.; Barrera, Luis A.; Gisselbrecht, Stephen S.

• Source: Hume, Maxwell A., Luis A. Barrera, Stephen S. Gisselbrecht, and Martha L. Bulyk. 2014. “UniPROBE, Update 2015: New Tools and Content for the Online Database of

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Small molecules of different origins have distinct distributions of structural complexity that correlate with protein-binding profiles

• Authors : Clemons, Paul A.; Bodycombe, Nicole E.; Carrinski, Hyman A.

• Source: Clemons, P. A., N. E. Bodycombe, H. A. Carrinski, J. A. Wilson, A. F. Shamji, B. K. Wagner, A. N. Koehler, and S. L. Schreiber. 2010. “Small Molecules of Different Origins Have Distinct

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Extensive Chromatin Fragmentation Improves Enrichment of Protein Binding Sites in Chromatin Immunoprecipitation Experiments

• Authors : Fan, Xiaochun; Lamarre-Vincent, Nathan; Wang, Jian

• Source: Fan, Xiaochun, Nathan Lamarre-Vincent, Qian Wang, and Kevin Struhl. 2008. Extensive chromatin fragmentation improves enrichment of protein

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Modeling Spatial Correlation of DNA Deformation: DNA Allostery in Protein Binding

• Authors : Xu, Xinliang; Ge, Hao; Gu, Chan

Subjects: Protein-DNA interactions; mechanical deformation; network model

• Source: Quick submit: 2013-08-19T16:12:14-04:00Xu, Xinliang, Hao Ge, Chan Gu, Yi Qin Gao, Siyuan S. Wang, Beng Joo Reginald Thio, James T. Hynes, X. Sunney Xie, and Jianshu Cao. 2013. Modeling spatial

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Degenerate in Vitro Genetic Selection Reveals Mutations That Diminish Alfalfa Mosaic Virus RNA Replication without Affecting Coat Protein Binding

• Authors : Rocheleau, Gail; Petrillo, Jessica; Guogas, Laura

• Source: Rocheleau, G., J. Petrillo, L. Guogas, and L. Gehrke. 2004. “Degenerate In Vitro Genetic Selection Reveals Mutations That Diminish Alfalfa Mosaic Virus RNA Replication without Affecting Coat

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Spatial determinants of the alfalfa mosaic virus coat protein binding site

• Authors : Laforest, Siana M.; Gehrke, Lee

• Source: LAFOREST, S. M. 2004. “Spatial Determinants of the Alfalfa Mosaic Virus Coat Protein Binding Site.” RNA 10 (1): 48–58.

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RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome

• Authors : Silverman, Ian M; Li, Fan; Alexander, Anissa

• Source: Silverman, Ian M, Fan Li, Anissa Alexander, Loyal Goff, Cole Trapnell, John L Rinn, and Brian D Gregory. 2014. “RNase-mediated protein footprint sequencing reveals

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UniPROBE, Update 2011: Expanded Content and Search Tools in the Online Database of Protein-Binding Microarray Data on Protein–DNA Interactions

• Authors : Robasky, Kimberly; Bulyk, Martha

• Source: Robasky, Kimberly, and Martha L. Bulyk. 2011. UniPROBE, update 2011: expanded content and search tools in the online database of protein-

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Preformed Protein-Binding Motifs in 7SK snRNA: Structural and Thermodynamic Comparisons with Retroviral TAR

• Authors : Durney, Michael; D'Souza, Victoria

Subjects: elongation; 7SK; transactivation response region

• Source: Durney, Michael Anthony, and Victoria M. D'Souza. 2010. Preformed protein-binding motifs in 7SK snRNA: Structural and thermodynamic

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