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A Deep Sequencing Strategy for Investigation of Virus Variants within African Swine Fever Virus-Infected Pigs

• Authors : Johnston, Camille Melissa; Olesen, Ann Sofie; Lohse, Louise

Subjects: African swine fever virus (ASFV); deep sequencing; minority variant analysis

• Source: Johnston , C M , Olesen , A S , Lohse , L , le Maire Madsen , A , Bøtner , A , Belsham , G J & Rasmussen , T B 2024 , ' A Deep Sequencing

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Deep-sequencing of viral genomes from a large and diverse cohort of treatment-naive HIV-infected persons shows associations between intrahost genetic diversity and viral load

• Source: INSIGHT START Study Group 2023 , ' Deep-sequencing of viral genomes from a large and diverse cohort of treatment-naive HIV-infected

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Deep sequencing of 1320 genes reveals the landscape of protein-truncating variants and their contribution to psoriasis in 19,973 Chinese individuals

• Authors : Xu, Huixin; Zhen, Qi; Bai, Mingzhou

Subjects: NATURAL-SELECTION; ASSOCIATION; POPULATION

• Source: Xu , H , Zhen , Q , Bai , M , Fang , L , Zhang , Y , Li , B , Ge , H , Moon , S , Chen , W , Fu , W , Xu , Q , Zhou , Y , Yu , Y , Lin , L , Yong , L , Zhang , T , Chen , S , Liu , S , Zhang , H ,

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Characterization of genomic clones by targeted deep sequencing of ctDNA to monitor liver cancer

• Authors : Sun, Yan; Kong, Xiaoyu; Yu, Jing

Subjects: Circulating tumor DNA (ctDNA); liver cancer; BGISEQ-500

• Source: Sun , Y , Kong , X , Yu , J , Zheng , X , Lin , M , Cheng , Z , Wang , H , An , N , Xie , Y , Zeng , S , Xue , S , Xia , M , Wei , X , Song , L , Liu , F , Fan , C , Fang , Z , Gao , L , Yang , Y ,

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A Deep-Sequencing Workflow for the Fast and Efficient Generation of High-Quality African Swine Fever Virus Whole-Genome Sequences

• Authors : Forth, Jan H.; Forth, Leonie F.; King, Jacqueline

Subjects: African swine fever virus (ASFV); Nanopore sequencing; next-generation sequencing (NGS)

• Source: Forth , J H , Forth , L F , King , J , Groza , O , Hübner , A , Olesen , A S , Höper , D , Dixon , L K , Netherton , C L , Rasmussen , T B , Blome , S , Pohlmann , A & Beer , M 2019 , ' A

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Deep sequencing of human papillomavirus positive loco-regionally advanced oropharyngeal squamous cell carcinomas reveals novel mutational signature

• Authors : Grønhøj, Christian; Jensen, David H; Agander, Tina

Subjects: Biomarkers; Tumor/genetics; DNA Mutational Analysis

• Source: Grønhøj , C , Jensen , D H , Agander , T , Kiss , K , Høgdall , E , Specht , L , Bagger , F O , Nielsen , F C & von Buchwald , C 2018 , ' Deep

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Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data

• Authors : Krøigård, Anne Bruun; Thomassen, Mads; Lænkholm, Anne-Vibeke

Subjects: Algorithms; Base Sequence; Carcinoma

• Source: Krøigård , A B , Thomassen , M , Lænkholm , A-V , Kruse , T A & Larsen , M J 2016 , ' Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted

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Population-wide sampling of retrotransposon insertion polymorphisms using deep sequencing and efficient detection

• Authors : Yu, Qichao; Zhang, Wei; Zhang, Xiaolong

Subjects: transposable element; retrotransposon insertion polymorphism; next-generation sequencing

• Source: Yu , Q , Zhang , W , Zhang , X , Zeng , Y , Wang , Y , Wang , Y , Xu , L , Huang , X , Li , N , Zhou , X , Lu , J , Guo , X , Li , G , Hou , Y , Liu , S & Li , B 2017 , ' Population-wide sampling of

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High diversity of picornaviruses in rats from different continents revealed by deep sequencing

• Authors : Hansen, Thomas Arn; Mollerup, Sarah; Nam-phuong Nguyen

Subjects: cardiovirus; metagenomics; picornavirus

• Source: Hansen , T A , Mollerup , S , Nam-phuong Nguyen , White , N E , Coghlan , M , Alquezar Planas , D E , Joshi , T , Jensen , R H , Fridholm , E M H , Kjartansdóttir , K R , Mourier , T , Warnow , T ,

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Minimal residual disease detection and evolved IGH clones analysis in acute B lymphoblastic leukemia using IGH deep sequencing

• Authors : Wu, Jinghua; Jia, Shan; Wang, Changxi

Subjects: acute B lymphoblast leukemia; minimal residual disease; high throughput sequencing

• Source: Wu , J , Jia , S , Wang , C , Zhang , W , Liu , S , Zeng , X , Mai , H , Yuan , X , Du , Y , Wang , X , Hong , X , Li , X , Wen , F , Xu , X , Pan , J , Li , C & Liu , X 2016 , ' Minimal residual

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