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T-cell-receptor cross-recognition and strategies to select safe T-cell receptors for clinical translation

• Authors : Bentzen, Amalie Kai; Hadrup, Sine Reker

Subjects: T cell receptor (TCR); TCR cross-recognition; TCR degeneracy

• Source: Bentzen , A K & Hadrup , S R 2019 , ' T-cell-receptor cross-recognition and strategies to select safe

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Epitope Specific Antibodies and T Cell Receptors in the Immune Epitope Database

• Authors : Mahajan, Swapnil; Vita, Randi; Shackelford, Deborah

Subjects: IEDB; Epitope; Antibody

• Source: Mahajan , S , Vita , R , Shackelford , D , Lane , J , Schulten , V , Zarebski , L , Jespersen , M C , Marcatili , P , Nielsen , M , Sette , A & Peters , B 2018 , ' Epitope Specific Antibodies and

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Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring

• Authors : Lanzarotti, Esteban; Marcatili, Paolo; Nielsen, Morten

Subjects: Antigens/Peptides/Epitopes; MHC; Modelling

• Source: Lanzarotti , E , Marcatili , P & Nielsen , M 2018 , ' Identification of the cognate peptide-MHC target of T cell

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Enhancing TCR specificity predictions by combined pan- and peptide-specific training, loss-scaling, and sequence similarity integration

• Authors : Jensen, Mathias Fynbo; Nielsen, Morten

Subjects: /dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being; name=SDG 3 - Good Health and Well-being

• Source: Jensen , M F & Nielsen , M 2024 , ' Enhancing TCR specificity predictions by combined pan- and peptide-specific training, loss-scaling, and sequence similarity integration ' , eLife , vol. 12 ,

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LYRA, a webserver for lymphocyte receptor structural modeling.

• Authors : Klausen, Michael Schantz; Anderson, Mads Valdemar; Jespersen, Martin Closter

• Source: Klausen , M S , Anderson , M V , Jespersen , M C , Nielsen , M & Marcatili , P 2015 , ' LYRA, a webserver for lymphocyte receptor structural modeling. ' , Nucleic Acids Research , vol. 43 , no. W1 ,

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NetTCR-2.1:Lessons and guidance on how to develop models for TCR specificity predictions

• Authors : Montemurro, Alessandro; Jessen, Leon Eyrich; Nielsen, Morten

• Source: Montemurro , A , Jessen , L E & Nielsen , M 2022 , ' NetTCR-2.1 : Lessons and guidance on how to develop models for TCR specificity predictions ' , Frontiers in Immunology , vol. 13 , 1055151 .

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Terminal deoxynucleotidyl transferase-mediated formation of protein binding polynucleotides

• Authors : Ashley, Jon; Schaap-Johansen, Anna-Lisa; Mohammadniaei, Mohsen

• Source: Ashley , J , Schaap-Johansen , A-L , Mohammadniaei , M , Naseri , M , Marcatili , P , Prado , M & Sun , Y 2021 , ' Terminal deoxynucleotidyl transferase-mediated formation of protein binding

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T-cell receptor cognate target prediction based on paired α and β chain sequence and structural CDR loop similarities

• Authors : Lanzarotti, Esteban; Marcatili, Paolo; Nielsen, Morten

Subjects: /dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being; name=SDG 3 - Good Health and Well-being

• Source: Lanzarotti , E , Marcatili , P & Nielsen , M 2019 , ' T-cell receptor cognate target prediction based on paired α and β chain sequence

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T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide-MHC complexes

• Authors : Bentzen, Amalie Kai; Such, Lina; Jensen, Kamilla Kjærgaard

• Source: Bentzen , A K , Such , L , Jensen , K K , Marquard , A M , Jessen , L E , Miller , N J , Church , C D , Lyngaa , R B , Koelle , D M , Becker , J C , Linnemann , C , Schumacher ,

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Using Merkel cell polyomavirus specific TCR gene therapy for treatment of Merkel cellcarcinoma

• Authors : Lyngaa, Rikke Birgitte; Pedersen, Natasja Wulff; Linnemann, C.

Subjects: /dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being; SDG 3 - Good Health and Well-being

• Source: Lyngaa , R B , Pedersen , N W , Linnemann , C , Schrama , D , Ibrani , D , Met , Ö , Straten , P T , Nghiem , P , Becker , J C & Hadrup , S R 2016 , ' Using Merkel

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