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Academic Journal

Bacillus subtilis -597 induces changes in lung pathology and inflammation during influenza A virus infection in pigs

Subjects: Pigs; Influenza A; Probiotics

  • Source: Winther , K , Kristensen , C , Henriksen , B L , Hansen , L H B , Ryt-Hansen , P , Vestergaard , G , Skovgaard , K , Sandvang , D , Boll , E J , Williams , A R & Larsen , L E 2024 , ' Bacillus

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Academic Journal

PEPMatch:a tool to identify short peptide sequence matches in large sets of proteins

Subjects: Benchmarking; BLAST comparison; Immunology

  • Source: Marrama , D , Chronister , W D , Westernberg , L , Vita , R , Koşaloğlu-Yalçın , Z , Sette , A , Nielsen , M , Greenbaum , J A & Peters , B 2023 , ' PEPMatch : a tool to identify short peptide

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Academic Journal

A window into the human immune system: comprehensive characterization of the complexity of antibody complementary-determining regions in functional antibodies

Subjects: Amino acid diversity; Antibodies/immunoglobulins; Antibody sequencing

  • Source: Mejias-Gomez , O , Madsen , A V , Skovgaard , K , Pedersen , L E , Morth , J P , Jenkins , T P , Kristensen , P & Goletz , S 2023 , ' A window into the human immune system: comprehensive

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Academic Journal

BepiPred-3.0: Improved B-cell epitope prediction using protein language models

Subjects: BepiPred-3.0; BepiPred; B-cell epitope prediction

  • Source: Clifford , J N , Høie , M H , Deleuran , S , Peters , B , Nielsen , M & Marcatili , P 2022 , ' BepiPred-3.0: Improved B-cell epitope prediction using protein language models ' , Protein Science ,

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Academic Journal

Genome-wide study of early and severe childhood asthma identifies interaction between CDHR3 and GSDMB

Subjects: Childhood asthma; Genetic interactions; Early-life

  • Source: Eliasen , A U , Pedersen , C E T , Rasmussen , M A , Wang , N , Soverini , M , Fritz , A , Stokholm , J , Chawes , B L , Morin , A , Bork-Jensen , J , Grarup , N , Pedersen , O , Hansen , T ,

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Academic Journal

Airway immune mediator levels during asthma‐like symptoms in young children and their possible role in response to azithromycin

Subjects: Asthma; Cytokines; Chemokines

  • Source: Carlsson , C J , Rasmussen , M A , Pedersen , S B , Wang , N , Stokholm , J , Chawes , B L , Bønnelykke , K & Bisgaard , H 2021 , ' Airway immune mediator levels during asthma‐like symptoms in

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Academic Journal

A user's guide to multicolor flow cytometry panels for comprehensive immune profiling

Subjects: Flow cytometry; Immune monitoring; Immunology

  • Source: Holmberg-Thyden , S , Grønbæk , K , Gang , A O , El Fassi , D & Hadrup , S R 2021 , ' A user's guide to multicolor flow cytometry panels for comprehensive immune profiling ' , Analytical

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Academic Journal

Cytokine Profile in Patients with Aseptic Loosening of Total Hip Replacements and Its Relation to Metal Release and Metal Allergy

Subjects: Interleukin-8; Allergy and immunology; Arthroplasty

  • Source: Christiansen , R J , Münch , H J , Bonefeld , C M , Thyssen , J P , Sloth , J J , Geisler , C , Søballe , K , Jellesen , M S & Jakobsen , S S 2019 , ' Cytokine Profile in Patients with Aseptic

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Academic Journal

Distinct roles of extracellular domains in the epstein-barr virus-encoded BILF1 receptor for signaling and major histocompatibility complex class I downregulation

Subjects: EBV-BILF1; Epstein-Barr virus; GPCR

  • Source: Fares , S , Spiess , K , Olesen , E T B , Zuo , J , Rosenkilde , M M , Jackson , S , Kledal , T N & Wills , M R 2019 , ' Distinct roles of extracellular domains in the epstein-barr virus-encoded BILF1

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Academic Journal

Enzyme promiscuity shapes adaptation to novel growth substrates

Subjects: Biochemistry; Genetics and Molecular Biology (all); Immunology and Microbiology (all)

  • Source: Guzmán , G I , Sandberg , T E , LaCroix , R A , Nyerges , Á , Papp , H , de Raad , M , King , Z A , Hefner , Y , Northen , T R , Notebaart , R A , Pál , C , Palsson , B O , Papp , B & Feist , A M

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Academic Journal

Sequential Immunization With Heterologous Viruses Does Not Result in Attrition of the B Cell Memory in Rainbow Trout

Subjects: Antibodies; B cell repertoire; Heterologous immunization

  • Source: Navelsaker , S , Magadan , S , Jouneau , L , Quillet , E , Olesen , N J , Munang'andu , H M , Boudinot , P & Evensen , Ø 2019 , ' Sequential Immunization With Heterologous Viruses Does Not Result in

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Academic Journal

Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research

Subjects: Cancer immunoediting; Canine cancer models; Comparative oncology

  • Source: Overgaard , N H , Fan , T M , Schachtschneider , K M , Principe , D R , Schook , L B & Jungersen , G 2018 , ' Of Mice, Dogs, Pigs, and Men: Choosing the Appropriate Model for Immuno-Oncology Research

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Academic Journal

Neonates colonized with pathogenic bacteria in the airways have a low-grade systemic inflammation

Subjects: Asthma; Clinical immunology; Environment and hygiene hypothesis

  • Source: Rahman Fink , N , Chawes , B L , Thorsen , J , Stokholm , J , Krogfelt , K , Schjørring , S , Kragh , M , Bønnelykke , K , Brix , S & Bisgaard , H 2018 , ' Neonates colonized with pathogenic

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Academic Journal

Integrated Inflammatory Stress (ITIS) Model

Subjects: Acute inflammatory system; HPA axis; Immune system

  • Source: Bangsgaard , E O , Hjorth , P G , Olufsen , M S , Mehlsen , J & Ottesen , J T 2017 , ' Integrated Inflammatory Stress (ITIS) Model ' , Bulletin of Mathematical Biology , vol. 79 , no. 7 , pp.

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Academic Journal

Different populations of CD11b + dendritic cells drive Th2 responses in the small intestine and colon

Subjects: Antigen-presenting cells; Antimicrobial responses; Lymphocyte differentiation

  • Source: Mayer , J U , Demiri , M , Agace , W W , MacDonald , A S , Svensson Frej , M & Milling , S W 2017 , ' Different populations of CD11b + dendritic cells drive Th2 responses in the small intestine and

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Academic Journal

Evidence for Human Adaptation and Foodborne Transmission of Livestock-Associated Methicillin-Resistant Staphylococcus aureus

Subjects: MRSA; foodborne transmission; host adaptation

  • Source: Larsen , J , Stegger , M , Andersen , P S , Petersen , A , Larsen , A R , Westh , H , Agersø , Y , Fetsch , A , Kraushaar , B , Kaesbohrer , A , Fessler , A T , Schwarz , S , Cuny , C , Witte , W ,

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Academic Journal

Streptococcus agalactiae Serotype IV in Humans and Cattle, Northern Europe

Subjects: IMMUNOLOGY; INFECTIOUS; GROUP-B STREPTOCOCCUS

  • Source: Lyhs , U , Kulkas , L , Katholm , J , Waller , K P , Saha , K , Tomusk , R J & Zadoks , R N 2016 , ' Streptococcus agalactiae Serotype IV in Humans and Cattle, Northern Europe ' , Emerging Infectious

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Academic Journal

The Non-structural Protein 5 and Matrix Protein Are Antigenic Targets of T Cell Immunity to Genotype 1 Porcine Reproductive and Respiratory Syndrome Viruses

Subjects: IMMUNOLOGY; EXPERIMENTAL CHALLENGE; LYMPHOCYTE SUBSETS

  • Source: Mokhtar , H , Pedrera , M , Frossard , J-P , Biffar , L , Hammer , S E , Kvisgaard , L K , Larsen , L E , Stewart , G R , Somavarapu , S , Steinbach , F & Graham , S P 2016 , ' The Non-structural

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Academic Journal

A diffusion approximation based on renewal processes with applications to strongly biased run–tumble motion

Subjects: Agricultural and Biological Sciences (all); Biochemistry; Genetics and Molecular Biology (all)

  • Source: Thygesen , U H 2016 , ' A diffusion approximation based on renewal processes with applications to strongly biased run–tumble motion ' , Bulletin of Mathematical Biology , vol. 78 , no. 3 , pp.

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Academic Journal

Immune gene expression in the spleen of chickens experimentally infected with Ascaridia galli

Subjects: IMMUNOLOGY; VETERINARY; MANNAN-BINDING LECTIN

  • Source: Dalgaard , T S , Skovgaard , K , Norup , L R , Pleidrup , J , Permin , A , Schou , T W , Vadekær , D F , Jungersen , G & Juul-Madsen , H R 2015 , ' Immune gene expression in the spleen of chickens

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Academic Journal

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

Subjects: binding prediction; Immune Epitope Database; allergy Hypersensitivity (MeSH) immune system disease10060; 10064; 34502

  • Source: Kim , Y , Sidney , J , Buus , S , Sette , A , Nielsen , M & Peters , B 2014 , ' Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions ' , B

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Academic Journal

Tumor antigens as proteogenomic biomarkers in invasive ductal carcinomas

Subjects: Primates Mammalia Vertebrata Chordata Animalia (Animals; Chordates; Humans03502; 03508; 10062

  • Source: Olsen , L R , Campos , B , Winther , O , Sgroi , D C , Karger , B L & Brusic , V 2014 , ' Tumor antigens as proteogenomic biomarkers in invasive ductal carcinomas ' , BMC Medical Genomics , vol. 7 ,

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Academic Journal

Immune epitope database analysis resource

Subjects: immune epitope database analysis resource; immune response; MHC-I00530; 02506; 10064

  • Source: Kim , Y , Ponomarenko , J , Zhu , Z , Tamang , D , Wang , P , Greenbaum , J , Lundegaard , C , Sette , A , Lund , O , Bourne , P E , Nielsen , M & Peters , B 2012 , ' Immune epitope database analysis

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