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Influenza transmission dynamics quantified from RNA in wastewater in Switzerland

• Authors : Nadeau, Sarah Ann; id_orcid:0 000-0003-1008-8918; Devaux, Alexander J.

• Source: Swiss Medical Weekly, 154 (1)

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How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort

• Authors : Wegner, Fanny; Cabrera-Gil, Blanca; Tanguy, Araud

Subjects: SARS-CoV-2; surveillance studies; genomic surveillance

• Source: Microbiology Spectrum

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Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data

• Authors : Nadeau, Sarah Ann; id_orcid:0 000-0003-1008-8918; Vaughan, Timothy G.

• Source: Science Translational Medicine, 15 (680)

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LAPIS is a fast web API for massive open virus sequencing data

• Authors : Chen, Chaoran; id_orcid:0 000-0002-8763-2937; Taepper, Alexander

• Source: BMC Bioinformatics, 24 (1)

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V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

• Authors : Fuhrmann, Lara; Jablonski, Kim Philipp; id_orcid:0 000-0002-4166-4343

Subjects: Next-generation sequencing; Data processing; Sustainable workflow

• Source: bioRxiv

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How much should we sequence? An analysis of the Swiss SARS-CoV-2 surveillance effort

• Authors : Wegner, Fanny; Cabrera-Gil, Blanca; Araud, Tanguy

• Source: medRxiv

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Global disparities in SARS-CoV-2 genomic surveillance

• Authors : Brito, Anderson F.; Semenova, Elizaveta; Dudas, Gytis

• Source: Nature Communications, 13

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Advancing genomic epidemiology by addressing the bioinformatics bottleneck: Challenges, design principles, and a Swiss example

• Authors : Chen, Chaoran; id_orcid:0 000-0002-8763-2937; Nadeau, Sarah Ann

Subjects: Genomic epidemiology; SARS-CoV-2; Data infrastructure

• Source: Epidemics, 39

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CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants

• Authors : Chen, Chaoran; id_orcid:0 000-0002-8763-2937; Nadeau, Sarah Ann

• Source: Bioinformatics, 38 (6)

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Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland

• Authors : Chen, Chaoran; id_orcid:0 000-0002-8763-2937; Nadeau, Sarah Ann

Subjects: Pandemic; SARS-CoV-2; COVID-19

• Source: Epidemics, 37

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