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Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics

• Authors : Valérian Lupo; Mick Van Vlierberghe; Hervé Vanderschuren

Subjects: assembly; 0303 health sciences; Science & Technology

• Source: Front MicrobiolFrontiers in Microbiology, Vol 12 (2021)

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On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics

• Authors : Karla C. T. Machado; Suereta Fortuin; Gisele Guicardi Tomazella

Subjects: Proteomics; 0301 basic medicine; 0303 health sciences

• Source: Front MicrobiolFrontiers in Microbiology, Vol 10 (2019)

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Contamination in Reference Sequence Databases: Time for Divide-and-Rule Tactics.

• Authors : Lupo, Valérian; Van Vlierberghe, Mick; Vanderschuren, Hervé

Subjects: NCBI RefSeq; assembly; contamination

• Source: Frontiers in Microbiology, 12, 755101 (2021)

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Bioinformatics Goes Viral: I. Databases, Phylogenetics and Phylodynamics Tools for Boosting Virus Research

• Authors : Federico Vello; Francesco Filippini; Irene Righetto

Subjects: SARS-CoV-2; bio-databases; Computational Biology

• Source: VirusesViruses, Vol 16, Iss 9, p 1425 (2024)

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Representation of candidate resistance mutations in complete and partial IAV sequences available in the NIH NCBI Virus sequence database (limit: 0.001%).

• Authors : Carolin M. Lieber; Hae-Ji Kang; Megha Aggarwal

Subjects: Biochemistry; Medicine; Microbiology

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The European Classical Swine Fever Virus Database: Blueprint for a Pathogen-Specific Sequence Database with Integrated Sequence Analysis Tools

• Authors : Alexander Postel; Stefanie Schmeiser; Bernd Zimmermann

Subjects: disease control; Molecular Epidemiology; 0303 health sciences

• Source: VirusesViruses, Vol 8, Iss 11, p 302 (2016)Viruses; Volume 8; Issue 11; Pages: 302

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Improving microbial genome annotations in an integrated database context.

• Authors : Chen IM; Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.; Markowitz VM

Subjects: Databases, Genetic* ; Microbiology*; Molecular Sequence Annotation/Molecular Sequence Annotation/Molecular Sequence Annotation/*methods

• Source: PloS one [PLoS One] 2013; Vol. 8 (2), pp. e54859. Date of Electronic Publication: 2013 Feb 12.Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: Print-Electronic Cited Medium: Internet

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Updates on two public databases for studies of HIV persistence; the Retrovirus Integration Database (RID) and HIV Proviral Sequence Database (PSD)

• Authors : J. Shan; Wei Shao; E. Halvas

Subjects: 0301 basic medicine; 03 medical and health sciences; Public aspects of medicine

• Source: Journal of Virus Eradication, Vol 5, Iss, Pp 12-13 (2019)

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Maximum likelihood phylogenetic tree of rust pathogens based on 18S rDNA partial sequences obtained from the GenBank nucleotide sequence database.

• Authors : Jaqueline Raquel de Almeida (10291652); Diego Mauricio Riaño Pachón (10291655); Livia Maria Franceschini (10291658)

Subjects: Biochemistry; Microbiology; Cell Biology

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Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

• Authors : Sheik, Cody S.; Kiel Reese, Brandi; Twing, Katrina I.

Subjects: 0303 health sciences; Deep subsurface; 15. Life on land

• Source: Front MicrobiolFrontiers in Microbiology, Vol 9 (2018)

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