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ON THE EQUIVALENCE OF DELAYED ARGUMENTS AND TRANSFER EQUATIONS FOR MODELING DYNAMIC SYSTEMS ; ОБ ЭКВИВАЛЕНТНОСТИ ИСПОЛЬЗОВАНИЯ ЗАПАЗДЫВАЮЩИХ АРГУМЕНТОВ И УРАВНЕНИЙ ПЕРЕНОСА ПРИ МОДЕЛИРОВАНИИ ДИНАМИЧЕСКИХ СИСТЕМ

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  • معلومة اضافية
    • Contributors:
      State Budgeted Project 0324-2016-0008 and the Russian Foundation for Basic Research, project 16-01-00237a
    • بيانات النشر:
      Institute of Cytology and Genetics of Siberian Branch of the RAS
    • الموضوع:
      2018
    • Collection:
      Vavilov Journal of Genetics and Breeding / Вавиловский журнал генетики и селекции
    • نبذة مختصرة :
      Development and improvement of mathematical methods used in modeling biological systems represents a topical issue of mathematical biology. In this paper, we considered a general form of a system of first-order delayed differential equations, traditionally used for describing the function of biological systems of different hierarchical levels. The main feature of this class of models is that some inherent processes (for example, elongation of DNA, RNA, and protein synthesis) are described in a subtle form and can be explicitly specified only through delayed arguments. In this paper, we propose an algorithm for rewriting systems with constant delayed arguments in an equivalent form that represents a system of partial differential equations with transfer equations. The algorithm is universal, since it does not impose any special conditions on the form of the right-hand parts of systems with delayed arguments. The proposed method is a multivariant algorithm. That is, based on one system of differential equations with delayed arguments, the algorithm allows writing out a number of special systems of partial differential equations, which are equivalent to the original system with delayed argument in the entire solution set. The results obtained indicate that delayed arguments and transfer equations are equivalent mathematical tools for describing all types of dynamic processes of energy and/or matter transfer in biological, chemical, and physical systems, indicating a deep-level similarity between properties of dynamic systems, regardless of their origin. At the same time, those processes that are subtle when retarded argument is used can be explicitly described in the form of transfer equations using systems of partial differential equations. This property is extremely important for the modeling of molecular genetic systems in which processes of DNA, RNA, and protein synthesis proceed at variable rates and need to be considered in certain problems, what can easily be done in models constructed using the mathematical ...
    • File Description:
      application/pdf
    • Relation:
      https://vavilov.elpub.ru/jour/article/view/1374/1042; Bhat D., Gopalakrishnan M. Transport of organelles by elastically coupled motor proteins. Eur. Phys. J. E. 2016;39(7):71. DOI 10.1140/epje/i2016-16071-0.; Bocharov G.A., Rihan F.A. Numerical modelling in biosciences using delay differential equations. J. Comput. Appl. Math. 2000;125(1-2): 183-199.; Busenberg S., Tang B. Mathematical models of the early embryonic cell cycle: the role of MPF activation and cyclin degradation. J. Math. Biol. 1994;32:573-596.; Dayananda P.W., Kemper J.T., Shvartsman M.M. A stochastic model for prostate-specific antigen levels. Math. Biosci. 2004;190(2): 113-126.; Demidenko G.V., Likhoshvai V.A. On differential equations with retarded argument. Siberian Mathematical Journal. 2005;46(3):417-430.; El’sgol’ts L.E., Norkin S.B. Vvedenie v teoriyu differentsial'nykh uravneniy s otklonyayushchimsya argumentom [Introduction to the Theory of Differential Equations with Deviating Argument]. Moscow: Nauka Publ., 1971;296. (in Russian); Gelens L., Huang K.C., Ferrell J.E., Jr. How does the Xenopus laevis embryonic cell cycle avoid spatial chaos? Cell Rep. 2015;12(5): 892-900. DOI 10.1016/j.celrep.2015.06.070.; Gérard C., Goldbeter A. Entrainment of the mammalian cell cycle by the circadian clock: modeling two coupled cellular rhythms. PLoS Comput. Biol. 2012;8(5):e1002516. DOI 10.1371/journal.pcbi.1002516.; Harrison L.M., David O., Friston K.J. Stochastic models of neuronal dynamics. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 2005; 360(1457):1075-1091.; Khlebodarova T.M., Kogai V.V., Fadeev S.I., Likhoshvai V.A. Chaos and hyperchaos in simple gene network with negative feedback and time delays. J. Bioinform. Comput. Biol. 2017;15(2):1650042. DOI 10.1142/S0219720016500426.; Kogai V.V., Khlebodarova T.M., Fadeev S.I., Likhoshvai V.A. Complex dynamics in alternative mRNA splicing systems: mathematical model. Vychislitelnye tekhnologii = Computational Technologies. 2015;20(1):38-52. (in Russian); Kogai V.V., Likhoshvai V.A., Fadeev S.I., Khlebodarova T.M. Multiple scenarios of transition to chaos in the alternative splicing model. Int. J. Bifurcat. Chaos. 2017;27(2):1730006. DOI 10.1142/S0218127417300063.; Likhoshvai V.A., Fadeev S.I., Demidenko G.V., Matushkin Yu.G. Modeling of multistage synthesis of a substance without branching by an equation with a retarded argument. Sibirskiy zhurnal industrialnoy matematiki = Siberian Journal of Industrial Mathematics. 2004; 7(1):73-94. (in Russian); Likhoshvai V.A., Fadeev S.I., Kogai V.V., Khlebodarova T.M. On the chaos in gene networks. J. Bioinform. Comput. Biol. 2013;11(1): 1340009. DOI 10.1142/S021972001340009.; Likhoshvai V.A., Kogai V.V., Fadeev S.I., Khlebodarova T.M. Alternative splicing can lead to chaos. J. Bioinform. Comput. Biol. 2015; 13:1540003. DOI 10.1142/S021972001540003X.; Likhoshvai V.A., Kogai V.V., Fadeev S.I., Khlebodarova T.M. Chaos and hyperchaos in a model of ribosome autocatalytic synthesis. Sci. Rep. 2016;6:38870. DOI 10.1038/srep38870.; Likhoshvai V.A., Matushkin Yu.G., Fadeev S.I. Problems of the theory of gene networks functioning. Sibirskiy zhurnal industrialnoy matematiki = Siberian Journal of Industrial Mathematics. 2003;6:64-80. (in Russian); Lu H., Song H., Zhu H. A series of population models for Hyphantria cunea with delay and seasonality. Math. Biosci. 2017;292:57-66.DOI 10.1016/j.mbs.2017.07.010.; McIsaac R.S., Huang K.C., Sengupta A., Wingreen N.S. Does the potential for chaos constrain the embryonic cell-cycle oscillator? PLoS Comput. Biol. 2011;7:e1002109.; Monk N.A.M. Oscillatory expression of Hes1, p53, and NF-κB driven by transcriptional time delays. Curr. Biol. 2003;13(16):1409-1413.; Myshkis A.D. General theory of delay differential equations. Uspekhi matematicheskikh nauk = Advances in Mathematical Sciences. 1949;4(5(33)):99-141. (in Russian); Nelson P.W., Murray J.D., Perelson A.S. A model of HIV-1 pathogenesis that includes an intracellular delay. Math. Biosci. 2000;163(2): 201-215.; Nelson P.W., Perelson A.S. Mathematical analysis of delay differential equation models of HIV-1 infection. Math. Biosci. 2002;179:73-94.; Risken H. The Fokker–Planck equation. Berlin: Springer, 1996.; Romond P.C., Rustici M., Gonze D., Goldbeter A. Alternating oscillations and chaos in a model of two coupled biochemical oscillators driving successive phases of the cell cycle. Ann. NY Acad. Sci. 1999;879:180-193.; Salapaka S., Rowchowdhury S., Salapaka M. Modeling and role of feedback controlled stochastic ratchets in cellular transport. Proc. of the 51st IEEE Conf. on Decision and Control. 2012;6426263:374-379.; Srividhya J., Gopinathan M.S. A simple time delay model for eukaryotic cell cycle. J. Theor. Biol. 2006;241:617-627.; Suzuki Y., Lu M., Ben-Jacob E., Onuchic J.N. Periodic, quasi-periodic and chaotic dynamics in simple gene elements with time delays. Sci. Rep. 2016;6:21037. DOI 10.1038/srep21037.; Yang Q., Ferrell J.E., Jr. The Cdk1-APC/C cell cycle oscillator circuit functions as a time-delayed, ultrasensitive switch. Nat. Cell Biol. 2013;15:519-525.; https://vavilov.elpub.ru/jour/article/view/1374
    • الرقم المعرف:
      10.18699/VJ18.341
    • Rights:
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    • الرقم المعرف:
      edsbas.FB199669