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Automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney) model ...

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  • معلومة اضافية
    • بيانات النشر:
      Janelia Research Campus
    • الموضوع:
      2025
    • Collection:
      DataCite Metadata Store (German National Library of Science and Technology)
    • نبذة مختصرة :
      Model description : Cellpose 3.0.9 was trained on nuclei from 28 2D slices from jrc_mus-kidney. Architecture : Cellpose 3.0.9 Number of parameters : 6600845 Input voxel size (nm) : 128 x 128 x 128 (X, Y, Z) Output voxel size (nm) : 128 x 128 x 128 (X, Y, Z) Classes trained on : Nucleus Training steps : 28000 Epochs : 1000 GPU : NVIDIA TITAN RTX RAM : 251.0 GiB Model wall time (sec) : 542.62 Software : Cellpose 3.0.9 Software DOI : https://doi.org/10.1038/s41592-022-01663-4 Source dataset (EM) ID : jrc_mus-kidney Source dataset (EM) DOI : https://doi.org/10.25378/janelia.16913035 Generated dataset DOI : https://doi.org/10.25378/janelia.26506522 Model URL : https://data.janelia.org/6d93n7 Github repo : https://github.com/janelia-cellmap/cellmap-models Visualization website : https://openorganelle.janelia.org/datasets/jrc_mus-kidney ...
    • Relation:
      https://doi.org/10.1038/s41592-022-01663-4; https://dx.doi.org/10.25378/janelia.26506351; https://dx.doi.org/10.17504/protocols.io.n2bvjnq8pgk5/v1
    • الرقم المعرف:
      10.25378/janelia.26506351.v1
    • الدخول الالكتروني :
      https://dx.doi.org/10.25378/janelia.26506351.v1
      https://janelia.figshare.com/articles/online_resource/Automatic_nuclei_segmentations_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_mouse_kidney_jrc_mus-kidney_model/26506351/1
    • Rights:
      Creative Commons Attribution 4.0 International ; https://creativecommons.org/licenses/by/4.0/legalcode ; cc-by-4.0
    • الرقم المعرف:
      edsbas.A7A09948