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Vibrational circular dichroism spectroscopy with a classical polarizable force field: alanine in the gas and condensed phases

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  • معلومة اضافية
    • Contributors:
      Institut de Chimie Physique (ICP); Institut de Chimie - CNRS Chimie (INC-CNRS)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS); Institut für Chemie Martin-Luther-Universität Halle-Wittenberg; Martin-Luther-Universität Halle Wittenberg (MLU); Processus d'Activation Sélective par Transfert d'Energie Uni-électronique ou Radiatif (UMR 8640) (PASTEUR); Département de Chimie - ENS Paris; École normale supérieure - Paris (ENS-PSL); Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-École normale supérieure - Paris (ENS-PSL); Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut de Chimie - CNRS Chimie (INC-CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS); Institut des Sciences Moléculaires d'Orsay (ISMO); Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS); SYSIPHE; Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS)-Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS); Laboratoire Interdisciplinaire de Physique Saint Martin d’Hères (LIPhy ); Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA); ANR-18-CE29-0001,Dichroprobe,Le dichroïsme circulaire comme sonde des interactions non covalentes(2018)
    • بيانات النشر:
      HAL CCSD
      Wiley-VCH Verlag
    • الموضوع:
      2024
    • Collection:
      Université Grenoble Alpes: HAL
    • نبذة مختصرة :
      International audience ; Polarizable force fields are an essential component for the chemically accurate modeling of complex molecular systems with a significant degree of fluxionality, beyond harmonic or perturbative approximations. In this contribution we examine the performance of such an approach for the vibrational spectroscopy of the alanine amino acid, in the gas and condensed phases, from the Fourier transform of appropriate time correlation functions generated along molecular dynamics (MD) trajectories. While the infrared (IR) spectrum only requires the electric dipole moment, the vibrational circular dichroism (VCD) spectrum further requires knowledge of the magnetic dipole moment, for which we provide relevant expressions to be used with polarizable force fields. The AMOEBA force field was employed here to model alanine in the neutral and zwitterionic isolated forms, solvated by water or nitrogen, and as a crystal. Within this framework, comparison of the electric and magnetic dipole moments to those obtained with nuclear velocity perturbation theory based on density‐functional theory for the same MD trajectories are found to agree well with one another. The statistical convergence of the IR and VCD spectra is examined and found to be more demanding in the latter case. Comparisons with experimental frequencies are also provided for the condensed phases.
    • Relation:
      hal-04489317; https://universite-paris-saclay.hal.science/hal-04489317; https://universite-paris-saclay.hal.science/hal-04489317/document; https://universite-paris-saclay.hal.science/hal-04489317/file/main_CPC_rev_nohighlight.pdf
    • الرقم المعرف:
      10.1002/cphc.202300982
    • Rights:
      http://creativecommons.org/licenses/by-nc-nd/ ; info:eu-repo/semantics/OpenAccess
    • الرقم المعرف:
      edsbas.A0EE5FF3