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Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome

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  • معلومة اضافية
    • Contributors:
      Mahidol University Bangkok; Génétique fonctionnelle des Maladies infectieuses - Functional Genetics of Infectious Diseases; Institut Pasteur Paris (IP)-Centre National de la Recherche Scientifique (CNRS); Kyoto University; This research was supported by National Research Council of Thailand (NRCT) (grant number 92/2550). Additionally, the research was partial funded by the Office of the Higher Education Commission and Mahidol University under the National Research Universities Initiative. W. Lert-itthiporn was supported by a scholarship from the Medical Scholars Program, Mahidol University. P. Malasit was supported by NSTDA Chair Professor Grant. P. Suriyaphol was supported by a National Research University (NRU) Grant through Mahidol University and TRF-office for R&D.
    • بيانات النشر:
      HAL CCSD
      BioMed Central
    • الموضوع:
      2018
    • Collection:
      Institut Pasteur: HAL
    • نبذة مختصرة :
      International audience ; Background: Imputation involves the inference of untyped single nucleotide polymorphisms (SNPs) in genome-wide association studies. The haplotypic reference of choice for imputation in Southeast Asian populations is unclear. Moreover, the influence of SNP annotation on imputation results has not been examined.
    • Relation:
      info:eu-repo/semantics/altIdentifier/pmid/29439659; pasteur-02003873; https://hal-pasteur.archives-ouvertes.fr/pasteur-02003873; https://hal-pasteur.archives-ouvertes.fr/pasteur-02003873/document; https://hal-pasteur.archives-ouvertes.fr/pasteur-02003873/file/Lert-Itthiporn_2018_BMC_Med_Gen.pdf; PUBMED: 29439659
    • الرقم المعرف:
      10.1186/s12881-018-0534-8
    • الدخول الالكتروني :
      https://hal-pasteur.archives-ouvertes.fr/pasteur-02003873
      https://hal-pasteur.archives-ouvertes.fr/pasteur-02003873/document
      https://hal-pasteur.archives-ouvertes.fr/pasteur-02003873/file/Lert-Itthiporn_2018_BMC_Med_Gen.pdf
      https://doi.org/10.1186/s12881-018-0534-8
    • Rights:
      info:eu-repo/semantics/OpenAccess
    • الرقم المعرف:
      edsbas.7AEBEE1