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The complete mitochondrial DNA of the carnivorous sponge Lycopodina hypogea is putatively complemented by microDNAs

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  • معلومة اضافية
    • Contributors:
      Universidade do Estado do Rio de Janeiro Brasil = Rio de Janeiro State University Brazil = Université d'État de Rio de Janeiro Brésil (UERJ); Universidade Federal do Rio de Janeiro Brasil = Federal University of Rio de Janeiro Brazil = Université fédérale de Rio de Janeiro Brésil (UFRJ); Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE); Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement IRD : UMR237-Centre National de la Recherche Scientifique (CNRS)
    • بيانات النشر:
      CCSD
      PeerJ
    • الموضوع:
      2024
    • Collection:
      Aix-Marseille Université: HAL
    • نبذة مختصرة :
      International audience ; Carnivorous sponges (Porifera, Demospongiae, Cladorhizidae), contrary to the usual filter-feeding mechanism of sponges, are specialized in catching larger prey through adhesive surfaces or hook-like spicules. The mitochondrial DNA of sponges overall present several divergences from other metazoans, and while presenting unique features among major transitions, such as in calcarean and glass sponges, poriferan mitogenomes are relatively stable within their groups. Here, we report and discuss the mitogenome of Lycopodina hypogea (Vacelet & Boury-Esnault, 1996), which greatly vary from its subordinal counterparts in both structure and gene order. This mitogenome is seemingly multipartite into three chromosomes, two of them as microDNAs. The main chromosome, chrM1, is unusually large, 31,099 bp in length, has a unique gene order within Poecilosclerida, and presents two rRNA, 13 protein and 19 tRNA coding genes. Intergenic regions comprise approximately 40% of chrM1, bearing several terminal direct and inverted repeats (TDRr and TIRs) but holding no vestiges of former mitochondrial sequences, pseudogenes, or transposable elements. The nd4l and trnI(gau) genes are likely located in microDNAs thus comprising putative mitochondrial chromosomes chrM2, 291 bp, and chrM3, 140 bp, respectively. It is unclear which processes are responsible for the remarkable features of the of L. hypogea mitogenome, including a generalized gene rearrangement, long IGRs, and putative extrachromosomal genes in microDNAs.
    • الرقم المعرف:
      10.7717/peerj.18255
    • الدخول الالكتروني :
      https://amu.hal.science/hal-04918675
      https://amu.hal.science/hal-04918675v1/document
      https://amu.hal.science/hal-04918675v1/file/Silva%20de%20Paula%20et%20al_2024.pdf
      https://doi.org/10.7717/peerj.18255
    • Rights:
      http://creativecommons.org/licenses/by/ ; info:eu-repo/semantics/OpenAccess
    • الرقم المعرف:
      edsbas.5A75B131