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The Truncated Conjugate Gradient (TCG), a Non-iterative/Fixed-cost Strategy for Computing Polarization in Molecular Dynamics: Fast Evaluation of Analytical Forces

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  • معلومة اضافية
    • Contributors:
      Laboratoire de chimie théorique (LCT); Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS); Institut des Sciences du Calcul et des Données (ISCD); Université Pierre et Marie Curie - Paris 6 (UPMC)-Sorbonne Université (SU); University of Texas at Austin Austin; Institut Universitaire de France (IUF); Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.); ANR-11-IDEX-0004,SUPER,Sorbonne Universités à Paris pour l'Enseignement et la Recherche(2011)
    • بيانات النشر:
      HAL CCSD
      American Institute of Physics
    • الموضوع:
      2017
    • Collection:
      Archive ouverte HAL (Hyper Article en Ligne, CCSD - Centre pour la Communication Scientifique Directe)
    • نبذة مختصرة :
      International audience ; In a recent paper (J. Chem. Theory. Comput., 2017, 13, 180-190) we proposed the Truncated Conjugate Gradient (TCG) approach to compute the polarization energy and forces in polarizable molecular simulations. The method consists in truncating the Conjugate Gradient algorithm at a fixed predetermined order leading to a fixed computational cost and can thus be considered " non-iterative ". This gives the possibility to derive analytical forces avoiding the usual energy conservation (i.e. drifts) issues occurring with iterative approaches. key point concerns the evaluation of the analytical gradients, which is more complex than with an usual solver. In this paper, after reviewing the present state of the art of polarization solvers, we detail a viable strategy for the efficient implementation of the TCG gradients calculation. The complete cost of the approach is then mesured as it is tested using a multi-timestep scheme and compared to timings using usual iterative approaches. We show that the TCG method is more efficient than traditional techniques, making it a method of choice for future long molecular dynamics simulations using polarizable force fields where energy conservation matters. We detail the various steps required for the implementation of the complete method by software developers.
    • Relation:
      info:eu-repo/semantics/altIdentifier/arxiv/1708.01539; hal-01571663; https://hal.archives-ouvertes.fr/hal-01571663; https://hal.archives-ouvertes.fr/hal-01571663v2/document; https://hal.archives-ouvertes.fr/hal-01571663v2/file/TCG-grad-ACCEPTED-AIP.pdf; ARXIV: 1708.01539
    • الرقم المعرف:
      10.1063/1.4985911
    • Rights:
      info:eu-repo/semantics/OpenAccess
    • الرقم المعرف:
      edsbas.4D28B142