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Computational Analysis of Chemical Space of Natural Compounds Interacting with Sulfotransferases

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  • معلومة اضافية
    • Contributors:
      Bulgarian Academy of Sciences = Académie bulgare des sciences Académie des sciences de Bulgarie = Българска академия на науките (BAS); Institute of Biophysics and Biomedical Engineering Sofia; Chimie médicinale et recherche translationnelle (ERL Inserm U1268); Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité); Department of Physics and Astronomy Clemson; Clemson University; Laboratoire Génomique, bioinformatique et chimie moléculaire (GBCM); Conservatoire National des Arts et Métiers CNAM (CNAM); Maladies neurodéveloppementales et neurovasculaires (NeuroDiderot (UMR_S_1141 / U1141)); Institut de transplantation urologie-néphrologie (ITUN); Université de Nantes (UN)-Centre Hospitalier Universitaire de Nantes = Nantes University Hospital (CHU Nantes); Institut National de la Santé et de la Recherche Médicale (INSERM); Immunotherapy in Transplantation And Autoimmunity (Team 3 - U1064 Inserm - CRTI); Centre de Recherche en Transplantation et Immunologie (U1064 Inserm - CRTI); Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Nantes - UFR de Médecine et des Techniques Médicales (UFR MEDECINE); Université de Nantes (UN)-Université de Nantes (UN)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Nantes - UFR de Médecine et des Techniques Médicales (UFR MEDECINE); Université de Nantes (UN)-Université de Nantes (UN)
    • بيانات النشر:
      CCSD
      MDPI
    • الموضوع:
      2021
    • Collection:
      Inserm: HAL (Institut national de la santé et de la recherche médicale)
    • نبذة مختصرة :
      International audience ; The aim of this study was to investigate the chemical space and interactions of natural compounds with sulfotransferases (SULTs) using ligand- and structure-based in silico methods. An in-house library of natural ligands (hormones, neurotransmitters, plant-derived compounds and their metabolites) reported to interact with SULTs was created. Their chemical structures and properties were compared to those of compounds of non-natural (synthetic) origin, known to interact with SULTs. The natural ligands interacting with SULTs were further compared to other natural products for which interactions with SULTs were not known. Various descriptors of the molecular structures were calculated and analyzed. Statistical methods (ANOVA, PCA, and clustering) were used to explore the chemical space of the studied compounds. Similarity search between the compounds in the different groups was performed with the ROCS software. The interactions with SULTs were additionally analyzed by docking into different experimental and modeled conformations of SULT1A1. Natural products with potentially strong interactions with SULTs were outlined. Our results contribute to a better understanding of chemical space and interactions of natural compounds with SULT enzymes and help to outline new potential ligands of these enzymes.
    • الرقم المعرف:
      10.3390/molecules26216360
    • الدخول الالكتروني :
      https://cnam.hal.science/hal-03448343
      https://cnam.hal.science/hal-03448343v1/document
      https://cnam.hal.science/hal-03448343v1/file/molecules-26-06360.pdf
      https://doi.org/10.3390/molecules26216360
    • Rights:
      http://creativecommons.org/licenses/by/ ; info:eu-repo/semantics/OpenAccess
    • الرقم المعرف:
      edsbas.421997F9