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Dissection of quantitative trait loci in the Lachancea waltii yeast species highlights major hotspots

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  • معلومة اضافية
    • Contributors:
      Génétique moléculaire, génomique, microbiologie (GMGM); Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS); Centre de Recherche en Cancérologie de Marseille (CRCM); Aix Marseille Université (AMU)-Institut Paoli-Calmettes (IPC); Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS); ANR-18-CE12-0013,RecombFun,Evolution du patron de recombinaison et de mutations fonctionnelles à travers différentes espèces(2018)
    • بيانات النشر:
      HAL CCSD
      Genetics Society of America
    • الموضوع:
      2021
    • Collection:
      Aix-Marseille Université: HAL
    • نبذة مختصرة :
      Dissecting the genetic basis of complex trait remains a real challenge. The budding yeast Saccharomyces cerevisiae has become a model organism for studying quantitative traits, successfully increasing our knowledge in many aspects. However, the exploration of the genotype-phenotype relationship in non-model yeast species could provide a deeper insight into the genetic basis of complex traits. Here, we have studied this relationship in the Lachancea waltii species which diverged from the S. cerevisiae lineage prior to the whole-genome duplication. By performing linkage mapping analyses in this species, we identified 86 quantitative trait loci (QTL) impacting the growth in a large number of conditions. The distribution of these loci across the genome has revealed two major QTL hotspots. A first hotspot corresponds to a general growth QTL, impacting a wide range of conditions. By contrast, the second hotspot highlighted a trade-off with a disadvantageous allele for drug-free conditions which proved to be advantageous in the presence of several drugs. Finally, a comparison of the detected QTL in L. waltii with those which had been previously identified for the same trait in a closely related species, Lachancea kluyveri was performed. This analysis clearly showed the absence of shared QTL across these species. Altogether, our results represent a first step toward the exploration of the genetic architecture of quantitative trait across different yeast species.
    • Relation:
      hal-03787093; https://hal.science/hal-03787093; https://hal.science/hal-03787093/document; https://hal.science/hal-03787093/file/islandora_139013.pdf
    • الرقم المعرف:
      10.1093/g3journal/jkab242
    • الدخول الالكتروني :
      https://hal.science/hal-03787093
      https://hal.science/hal-03787093/document
      https://hal.science/hal-03787093/file/islandora_139013.pdf
      https://doi.org/10.1093/g3journal/jkab242
    • Rights:
      info:eu-repo/semantics/OpenAccess
    • الرقم المعرف:
      edsbas.2442C7ED