Genome-wide survey of catalase genes in Brassica rapa, Brassica oleracea, and Brassica napus: identification, characterization, molecular evolution, and expression profiling of BnCATs in response to salt and cadmium stress.

Publisher: Springer Country of Publication: Austria NLM ID: 9806853 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1615-6102 (Electronic) Linking ISSN: 0033183X NLM ISO Abbreviation: Protoplasma Subsets: MEDLINE

Publication: <1998->: Wien ; New York : Springer
Original Publication: Leipzig : Verlag von Gebrüder Borntraeger, 1927-

Brassica napus* ; Brassica rapa*/genetics ; Brassica rapa*/metabolism; Cadmium/metabolism ; Genome, Plant ; Phylogeny ; Catalase/metabolism ; Hydrogen Peroxide/metabolism ; Multigene Family ; Evolution, Molecular ; Gene Expression Regulation, Plant ; Plant Proteins/metabolism

Catalase (CAT, EC 1.11.1.6), one of the most important antioxidant enzymes, can control excess levels of H 2 O 2 produced under oxidative stress in plants. In this study, 16, 8, and 7 CAT genes in the genome of Brassica napus, B. rapa, and B. oleracea were identified, respectively. Phylogenetic studies showed that CATs could be divided into two main groups, each containing specific monocotyledon and dicotyledon subgroups. Motifs, gene structure, and intron phase of CATs in B. napus, Brassica rapa, and Brassica oleracea are highly conserved. Analysis of codon usage bias showed the mutation pressure and natural selection of the codon usage of CATs. Segmental duplication and polyploid were major factors in the expansion of this gene family in B. napus, and genes have experienced  negative selection during evolution. Existence of hormones and stress-responsive cis-elements and identifying miRNA molecules affecting CATs showed that these genes are complexly regulated at the transcriptional and posttranscriptional levels. Based on RNA-seq data, CATs are divided into two groups; the first group has moderate and specific expression in flowers, leaves, stems, and roots, while the second group shows expression in most tissues. qRT-PCR analysis showed that the expression of these genes is dynamic and has a specific expression consistent with other CAT genes in response to salinity and cadmium (Cd) stresses. These results provide information for further investigation of the function of CAT genes in response to stresses and the development of tolerant  plants.
(© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.)

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Keywords: Abiotic stress; Codon usage bias; Evolution; Gene expression; Tertiary structure

00BH33GNGH (Cadmium)
EC 1.11.1.6 (Catalase)
BBX060AN9V (Hydrogen Peroxide)
0 (Plant Proteins)

Date Created: 20221210 Date Completed: 20230426 Latest Revision: 20230426

20240628

10.1007/s00709-022-01822-6

36495350