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Genome-wide analysis of GDSL-type esterases/lipases in Arabidopsis.

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اقرأ على الانترنت اقرأ أكثر حفظ في قائمتي
  • معلومة اضافية
    • المصدر:
      Publisher: Kluwer Academic Country of Publication: Netherlands NLM ID: 9106343 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-5028 (Electronic) Linking ISSN: 01674412 NLM ISO Abbreviation: Plant Mol Biol Subsets: MEDLINE
    • بيانات النشر:
      Publication: Dordrecht : Kluwer Academic
      Original Publication: The Hague ; Boston : Martinus Nijhoff/Dr. W. Junk, 1981-
    • الموضوع:
      Genome, Plant*; Arabidopsis/*enzymology ; Arabidopsis/*genetics ; Esterases/*genetics ; Lipase/*genetics; Arabidopsis/growth & development ; Chromosomes, Plant/genetics ; DNA, Bacterial/genetics ; Expressed Sequence Tags ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Gene Knockout Techniques ; Genes, Plant ; Mutagenesis, Insertional/genetics ; Oligonucleotide Array Sequence Analysis ; Phenotype ; Phylogeny ; Segmental Duplications, Genomic ; Sequence Alignment
    • نبذة مختصرة :
      Key Message: In this present study, we introduce a fundamental framework and provide information regarding the possible roles of GDSL-type esterase/lipase gene family in Arabidopsis. GDSL-type esterases/lipases are hydrolytic enzymes with multifunctional properties such as broad substrate specificity, regiospecificity, and stereoselectivity. In this study, we identified 105 GDSL-type esterase/lipase genes in Arabidopsis thaliana by conducting a comprehensive computational analysis. Expression studies indicated that GDSL-type lipase proteins showed varied expression patterns. Phylogenetic tree analysis indicated that AtGELP (Arabidopsis thaliana GDSL-type esterase/lipase protein) gene family was divided into four clades. The phylogenetic analysis, combined with protein motif architectures, and expression profiling were used to predict the roles AtGELP genes. To investigate the physical roles of the AtGELP gene family, we successfully screened 88 AtGELP T-DNA knockout lines for 54 AtGELP genes from 199 putative SALK T-DNA mutants. Transgenic plants of AtGELP genes were used to elucidate the phenotypic characteristics in various developmental stages or stress conditions. Our results suggest that the AtGELP genes have diverse physical functions such as affecting the germination rate and early growth of seedlings subjected to high concentrations of glucose, or being involved in biotic stress responses.
    • References:
      Plant Physiol. 2002 Jan;128(1):247-55. (PMID: 11788770)
      J Biochem Biophys Methods. 1997 Dec 3;35(3):153-9. (PMID: 9470094)
      Biochem Biophys Res Commun. 2008 Oct 3;374(4):693-8. (PMID: 18680725)
      Plant J. 2008 Mar;53(5):802-13. (PMID: 18036206)
      Sex Plant Reprod. 2009 Sep;22(3):197-204. (PMID: 20033440)
      Mol Biol Evol. 2011 Jan;28(1):551-65. (PMID: 20801908)
      Plant J. 1998 Dec;16(6):735-43. (PMID: 10069079)
      J Biochem Mol Biol. 2003 Sep 30;36(5):433-41. (PMID: 14536025)
      Adv Bioinformatics. 2008;2008:420747. (PMID: 19956698)
      Plant Cell Environ. 2012 Dec;35(12):2155-69. (PMID: 22632271)
      Bot Stud. 2015 Dec;56(1):33. (PMID: 28510842)
      Plant Cell Environ. 2006 Oct;29(10):1890-900. (PMID: 16930315)
      FEBS Lett. 2014 May 2;588(9):1652-8. (PMID: 24631536)
      Mol Plant Microbe Interact. 2008 Apr;21(4):404-10. (PMID: 18321186)
      Plant Cell Physiol. 2010 Jan;51(1):123-31. (PMID: 19996150)
      Plant Physiol. 2004 Sep;136(1):2621-32. (PMID: 15375207)
      Nucleic Acids Res. 2009 Jul;37(Web Server issue):W202-8. (PMID: 19458158)
      Plant Cell. 2006 Jun;18(6):1524-36. (PMID: 16679459)
      Plant J. 2009 Apr;58(2):235-45. (PMID: 19077166)
      Prog Lipid Res. 2004 Nov;43(6):534-52. (PMID: 15522763)
      Plant Mol Biol. 2008 Sep;68(1-2):173-83. (PMID: 18553138)
      Biochem Biophys Res Commun. 2009 Feb 20;379(4):1038-42. (PMID: 19146828)
      Mol Plant Microbe Interact. 1993 Nov-Dec;6(6):715-21. (PMID: 8118054)
      BMC Genomics. 2012 Jul 15;13:309. (PMID: 22793791)
      Trends Biochem Sci. 1995 May;20(5):178-9. (PMID: 7610479)
      Planta. 2008 Feb;227(3):539-58. (PMID: 17929052)
      Plant Physiol. 2013 Dec;163(4):1776-91. (PMID: 24170202)
    • Contributed Indexing:
      Keywords: Arabidopsis; Esterase; GDSL; Genome-wide analysis; Lipase
    • الرقم المعرف:
      0 (DNA, Bacterial)
      0 (T-DNA)
      EC 3.1.- (Esterases)
      EC 3.1.1.3 (Lipase)
    • الموضوع:
      Date Created: 20170826 Date Completed: 20171117 Latest Revision: 20220408
    • الموضوع:
      20221213
    • الرقم المعرف:
      10.1007/s11103-017-0648-y
    • الرقم المعرف:
      28840447