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Academic Journal

A Novel Weighted Ensemble Framework of Transformer and Deep Q-Network for ATP-Binding Site Prediction Using Protein Language Model Features.

Authors : Song J; College of Computer Science and Technology, Inner Mongolia Minzu University, Tongliao 028000, China.; Jiang J

Subjects: Adenosine Triphosphate*/Adenosine Triphosphate*/Adenosine Triphosphate*/metabolism ; Adenosine Triphosphate*/Adenosine Triphosphate*/Adenosine Triphosphate*/chemistry ; Proteins*/Proteins*/Proteins*/chemistry

Source: International journal of molecular sciences [Int J Mol Sci] 2026 Mar 28; Vol. 27 (7). Date of Electronic Publication: 2026 Mar 28.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

PepLM-GNN: A graph neural network framework leveraging pre-trained language models for peptide-protein binding prediction.

Authors : Yan K; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.; Zhongguancun Academy, Beijing, China.

Subjects: Peptides*/Peptides*/Peptides*/metabolism ; Peptides*/Peptides*/Peptides*/chemistry ; Computational Biology*/Computational Biology*/Computational Biology*/methods

Source: PLoS computational biology [PLoS Comput Biol] 2026 Mar 24; Vol. 22 (3), pp. e1014084. Date of Electronic Publication: 2026 Mar 24 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

MultiPert: An adversarial alignment and dual attention framework for single-cell multi-omics perturbation prediction.

Authors : Zhao M; Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, China.; University of Chinese Academy of Sciences, Beijing, China.

Subjects: Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods ; Computational Biology*/Computational Biology*/Computational Biology*/methods; Proteomics/Proteomics/Proteomics/methods

Source: PLoS computational biology [PLoS Comput Biol] 2026 Mar 11; Vol. 22 (3), pp. e1014054. Date of Electronic Publication: 2026 Mar 11 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

MV-HAGCN: Prediction of miRNA-Disease Association Based on Multi-View Hybrid Attention Graph Convolutional Network.

Authors : Xing K; School of Mathematics and Statistics, Hainan Normal University, Haikou 571158, China.; Zhang Y

Subjects: MicroRNAs*/MicroRNAs*/MicroRNAs*/genetics ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Genetic Predisposition to Disease*

Source: International journal of molecular sciences [Int J Mol Sci] 2026 Apr 15; Vol. 27 (8). Date of Electronic Publication: 2026 Apr 15.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067

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Academic Journal

PhageCGRNet: Integrating Chaos Game Representation of Genomes with Convolutional Neural Network for accurate phage host classification prediction.

Authors : Wang T; National Center for Applied Mathematics in Hunan & Key Laboratory of Intelligent Computing and Information Processing of Ministry of Education, Xiangtan University, Hunan, China.; Yu ZG

Subjects: Bacteriophages*/Bacteriophages*/Bacteriophages*/genetics ; Bacteriophages*/Bacteriophages*/Bacteriophages*/classification ; Computational Biology*/Computational Biology*/Computational Biology*/methods

Source: PLoS computational biology [PLoS Comput Biol] 2026 Apr 09; Vol. 22 (4), pp. e1014130. Date of Electronic Publication: 2026 Apr 09 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

Foundation Protein Language Models for Influenza A Virus T-Cell Epitope Prediction: A Transformer-Based Viroinformatics Framework.

Authors : Bukhari SNH; National Institute of Electronics and Information Technology (NIELIT) J&K, Srinagar 191132, India.; Ogudo KA

Subjects: Epitopes, T-Lymphocyte*/Epitopes, T-Lymphocyte*/Epitopes, T-Lymphocyte*/immunology ; Epitopes, T-Lymphocyte*/Epitopes, T-Lymphocyte*/Epitopes, T-Lymphocyte*/genetics ; Epitopes, T-Lymphocyte*/Epitopes, T-Lymphocyte*/Epitopes, T-Lymphocyte*/chemistry

Source: Viruses [Viruses] 2026 Mar 18; Vol. 18 (3). Date of Electronic Publication: 2026 Mar 18.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915

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Academic Journal

Multi-ACPNet: A multi-scale sequence-structure feature fusion framework for anticancer peptide identification and functional prediction.

Authors : Meng L; College of Information Science and Engineering, Northeastern University, Shenyang, China.; The Foshan Graduate School of Innovation, Northeastern University, Shenyang, China.

Subjects: Peptides*/Peptides*/Peptides*/chemistry ; Peptides*/Peptides*/Peptides*/pharmacology ; Computational Biology*/Computational Biology*/Computational Biology*/methods

Source: PLoS computational biology [PLoS Comput Biol] 2026 Mar 10; Vol. 22 (3), pp. e1014053. Date of Electronic Publication: 2026 Mar 10 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Academic Journal

MAKA-Map: Real-Valued Distance Prediction for Protein Folding Mechanisms via a Hybrid Neural Framework Integrating the Mamba and Kolmogorov-Arnold Networks.

Authors : Dong B; College of Computer and Control Engineering, Northeast Forestry University, Harbin 150040, China.; Hua Y

Subjects: Proteins*/Proteins*/Proteins*/chemistry ; Computational Biology*/Computational Biology*/Computational Biology*/methods ; Protein Folding*

Source: Biomolecules [Biomolecules] 2026 Jan 27; Vol. 16 (2). Date of Electronic Publication: 2026 Jan 27.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

G2PDeep-v2: A Web-Based Deep-Learning Framework for Phenotype Prediction and Biomarker Discovery for All Organisms Using Multi-Omics Data.

Authors : Zeng S; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO 65211, USA.; Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO 65211, USA.

Subjects: Biomarkers*/Biomarkers*/Biomarkers*/analysis ; Biomarkers*/Biomarkers*/Biomarkers*/metabolism ; Computational Biology*/Computational Biology*/Computational Biology*/methods

Source: Biomolecules [Biomolecules] 2025 Dec 01; Vol. 15 (12). Date of Electronic Publication: 2025 Dec 01.Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X

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Academic Journal

Combining bioinformatics prediction with experimental validation to explore the ameliorative effect of Psoralea corylifolia on vitiligo.

Authors : Zhang C; College of Traditional Chinese Medicine, Bozhou University, Bozhou, Anhui 236800 P.R. China.; Cao Z

Subjects: Psoralea*/Psoralea*/Psoralea*/chemistry ; Vitiligo*/Vitiligo*/Vitiligo*/drug therapy ; Vitiligo*/Vitiligo*/Vitiligo*/metabolism

Source: Molecular medicine reports [Mol Med Rep] 2026 Jun; Vol. 33 (6). Date of Electronic Publication: 2026 Apr 03.Publisher: D. A. Spandidos Country of Publication: Greece NLM ID: 101475259 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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نتائج البحث

فلترة النتائج

A Novel Weighted Ensemble Framework of Transformer and Deep Q-Network for ATP-Binding Site Prediction Using Protein Language Model Features.

PepLM-GNN: A graph neural network framework leveraging pre-trained language models for peptide-protein binding prediction.

MultiPert: An adversarial alignment and dual attention framework for single-cell multi-omics perturbation prediction.

MV-HAGCN: Prediction of miRNA-Disease Association Based on Multi-View Hybrid Attention Graph Convolutional Network.

PhageCGRNet: Integrating Chaos Game Representation of Genomes with Convolutional Neural Network for accurate phage host classification prediction.

Foundation Protein Language Models for Influenza A Virus T-Cell Epitope Prediction: A Transformer-Based Viroinformatics Framework.

Multi-ACPNet: A multi-scale sequence-structure feature fusion framework for anticancer peptide identification and functional prediction.

MAKA-Map: Real-Valued Distance Prediction for Protein Folding Mechanisms via a Hybrid Neural Framework Integrating the Mamba and Kolmogorov-Arnold Networks.

G2PDeep-v2: A Web-Based Deep-Learning Framework for Phenotype Prediction and Biomarker Discovery for All Organisms Using Multi-Omics Data.

Combining bioinformatics prediction with experimental validation to explore the ameliorative effect of Psoralea corylifolia on vitiligo.

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