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From 2D to 4D: a containerized workflow and browser to explore dynamic chromatin architecture

• Authors : David H. Rogers; Cullen Roth; Cameron Tauxe

Subjects: 3D visualization; Genome modeling; Epigenomics

• Source: BMC Bioinformatics, Vol 27, Iss 1, Pp 1-17 (2026)

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A novel machine learning architecture to improve classification of intermediate cases in health: workflow and case study for public health.

• Authors : Hammoud, Bassel¹ (AUTHOR) ; Semaan, Aline² (AUTHOR) ; Benova, Lenka² (AUTHOR)

• Source: BMC Bioinformatics. 7/16/2025, Vol. 26 Issue 1, p1-17. 17p.

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A permutable MLP-like architecture for disease prediction from gut metagenomic data

• Authors : Cong Jiang; Jian Yang; Xiaogang Peng

Subjects: Metagenomics; Diseases prediction; Deep learning

• Source: BMC Bioinformatics, Vol 25, Iss 1, Pp 1-11 (2024)

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Attention mechanism enhanced LSTM with residual architecture and its application for protein-protein interaction residue pairs prediction

• Authors : Jiale Liu; Xinqi Gong

Subjects: Residual architecture; Attention; LSTM

• Source: BMC Bioinformatics, Vol 20, Iss 1, Pp 1-11 (2019)

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Haplotype based testing for a better understanding of the selective architecture

• Authors : Haoyu Chen; Marta Pelizzola; Andreas Futschik

Subjects: Hypothesis test; Post hoc test; Selection

• Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-25 (2023)

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CFVisual: an interactive desktop platform for drawing gene structure and protein architecture

• Authors : Huilong Chen; Xiaoming Song; Qian Shang

Subjects: CFVisual; Gene structure; Motif

• Source: BMC Bioinformatics, Vol 23, Iss 1, Pp 1-8 (2022)

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A state-of-the-art technique to perform cloud-based semantic segmentation using deep learning 3D U-Net architecture

• Authors : Zeeshan Shaukat; Qurat ul Ain Farooq; Shanshan Tu

Subjects: Semantic segmentation; Deep learning; Cloud computing

• Source: BMC Bioinformatics, Vol 23, Iss 1, Pp 1-21 (2022)

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RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data

• Authors : Don Neumann; Anireddy S. N. Reddy; Asa Ben-Hur

Subjects: RNA basecalling; Oxford nanopore; Long read sequencing

• Source: BMC Bioinformatics, Vol 23, Iss 1, Pp 1-9 (2022)

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Heterogeneous computing architecture for fast detection of SNP-SNP interactions.

• Authors : Sluga, Davor¹ ; Curk, Tomaz¹ ; Zupan, Blaz^1,2

• Source: BMC Bioinformatics. 2014, Vol. 15 Issue 1, p1-16. 16p. 2 Black and White Photographs, 1 Diagram, 2 Charts, 2 Graphs.

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Identifying the sequence specificities of circRNA-binding proteins based on a capsule network architecture

• Authors : Zhengfeng Wang; Xiujuan Lei

Subjects: Circular RNA; RNA-binding protein; Sequence specificities

• Source: BMC Bioinformatics, Vol 22, Iss 1, Pp 1-16 (2021)

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