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Ubiquitin-specific proteases

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  • Publication Date:
    February 27, 1996
  • معلومة اضافية
    • Patent Number:
      5,494,818
    • Appl. No:
      08/005,002
    • Application Filed:
      January 15, 1993
    • نبذة مختصرة :
      The disclosure relates to a generic class of ubiquitin-specific proteases which specifically cleave at the C-terminus of the ubiquitin moiety in a ubiquitin fusion protein irrespective of the size of the ubiquitin fusion protein. More specifically, the disclosure relates to ubiquitin-specific proteases of this class which have been isolated from a cell. The disclosure also relates to isolated DNA sequences encoding the proteases of this class.
    • Inventors:
      Baker, Rohan T. (Garran, AUX); Tobias, John W. (Cambridge, MA); Varshavsky, Alexander (Boston, MA)
    • Assignees:
      Massachusetts Institute of Technology (Cambridge, MA)
    • Claim:
      We claim
    • Claim:
      1. An isolated ubiquitin-specific protease which specifically cleaves a ubiquitin fusion protein having a molecular weight of about 120 kilodaltons, the specific cleavage taking place in vitro between the C-terminal residue of ubiquitin and the N-terminal residue of the protein or peptide, the fusion protein being encoded by the DNA represented in Sequence ID Number 1.
    • Claim:
      2. An isolated protease of claim 1 which is encoded by the DNA represented in Sequence I.D. Number 5.
    • Claim:
      3. An isolated ubiquitin-specific protease which specifically cleaves a ubiquitin fusion protein having a molecular weight of about 120 kilodaltons, the specific cleavage taking place in a prokaryotic cell between the C-terminal residue of ubiquitin and the N-terminal residue of the protein or peptide, the fusion protein being encoded by the DNA represented in Sequence I.D. Number 1.
    • Claim:
      4. An isolated protease of claim 3 which is encoded by the DNA represented in Sequence I.D. Number 5.
    • Claim:
      5. An isolated protease of claim 3 which is encoded by the DNA represented in Sequence I.D. Number 7.
    • Current U.S. Class:
      435/219; 435/223; 435/226
    • Current International Class:
      C12N 950; C12N 958; C12N 964
    • Patent References Cited:
      5132213 July 1992 Bachmair et al.
      5156968 October 1992 Liu
      5212058 May 1993 Baker et al.
      5391490 February 1995 Varshausky et al.
    • Other References:
      Rohan T. Baker et al., "Ubiquitin-Specific Processing Proteases of the Yeast Saccharomyces Cerevisiae", CH200, Abstracts, 20th Annual Meetings Journal of Cellular Biochemistry, Keystone Symposia on Molecular & Cellular Biology, Supplement 15G, 1991, Apr. 6-Apr. 25, 1991, Wiley-Liss.
      K. Nagai and H. C. Thogersen, "Generation of .beta.-globin by sequence-specific Proteolysis of a hybrid protein produced in Escherichia coli," Nature 309:810-812 (1984).
      Hershko et al., "Role of the .alpha.-amino group of protein in ubiquitin-mediated protein breakdown," Pro. Natl. Acad. Sci. USA 81:7021-7025 (1985).
      Tsunasawa et al., "Amino-terminal Processing of Mutant Forms of Yeast Iso-1-cytochrome c," J. Biol. Chem. 260:5382-5391 (1985).
      Boissel et al., "Amino-terminal processing of proteins: Hemoglobin South Florida, a variant with retention of initiator methionine and N.sup..alpha. -acetylation," Proc. Natl. Acad. Sci. USA 82:8448-8452 (1985).
      Thornton et al., "Amino and Carboxy-terminal regions in globular proteins," J. Mol. Biol. 167:443-460 (1983).
      Ferber et al., "Transfer RNA is Required for Conjugation of Ubiquitin to Selective Substrates of the Ubiquitin- and ATP-dependent Proteolytic System," J. Biol. Chem. 261:3128-3134 (1986).
      Bachmair et al., "In Vivo Half-Life of a Protein is a Function of its Amino-Terminal Residue," Science 234:179-186 (1986).
      Ferber et al., "Role of arginine-tRNA in protein degradation by the ubiquitin pathway," Nature 326:808-811 (1988).
      Reiss et al., "Specificity of Binding of NH.sub.2 -terminal Residue of Proteins to Ubiquitin-Protein Ligase," J. Biol. Chem. 263:2693-2698 (1988).
      Townsend et al., "Defective Presentation to Class I-Restricted Cytotoxic T Lymphocytes in Vaccinia-Infected Cells is Overcome by Enhanced Degradation of Antigen," J. Exp. Med. 168:1211-1224 (1988).
      A. Bachmair and A. Varshavsky, "The Degradation Signal in a Short-Lived Protein," Cell 56:1019-1032 (1989).
      Chau et al., "A Multiubiquitin Chain is Confined to Specific Lysine in a Targeted Short-Lived Protein," Science 243:1576-1583 (1989).
      Gonda et al., "Universality and Structure of the N-end Rule," J. Biol. Chem. 264:16700-16712 (1989).
      Miller et al., "Cloning and Expression of a Yeast Ubiquitin-Protein Cleaving Activity in Escherichia Coli," Biotechnology 7:698-704 (1989).
      Helmut M. Sassenfeld, "Engineering Proteins for Purification," Trends in Biotechnology 8:88-93 (1990).
      Wilkinson et al., "The Neuron-Specific Protein PGP 9.5 is a Ubiquitin Carboxyl-Terminal Hydrolase," Science 246:670-675 (1989).
      Ohmen et al., "Divergent Overlapping Transcripts at the PET122 Locus in Saccharomyces cerevisiae," Mol. Cell. Biol. 10:3027-3035, (1990).
      Ohmen et al., "Molecular Cloning and Nucleotide Sequence of the Nuclear PET122 Gene Required for Expression of the Mitochondrial COX3 Gene in S. cerevisiae," Nucleic Acids Research 16:10783-10803 (1988).
      Tobias et al., J. Biol. Chem. 266:12021-12028 (1991).
      Agell et al., Biochem J. 273:615-620 (1991).
      Baker et al., J. Biol. Chem. 267:23364-23375 (1992).
      Sullivan et al., Plant Physiol. 94:710-716 (1990).
    • Primary Examiner:
      Wax, Robert A.
    • Assistant Examiner:
      Grimes, Eric
    • Attorney, Agent or Firm:
      Farrell, Kevin M.
    • الرقم المعرف:
      edspgr.05494818