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Detecting microsatellite instability by length comparison of microsatellites in the 3' untranslated region with RNA-seq.

• Authors : Choi JW; Department of Health Science and Technology, Seoul National University, 1 Gwanak-ro, Gwanak-gu, 08826 Seoul, Republic of Korea.; Lee JO

Subjects: Microsatellite Instability* ; 3' Untranslated Regions* ; Microsatellite Repeats*

• Source: Briefings in bioinformatics [Brief Bioinform] 2024 Jul 25; Vol. 25 (5).Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN:

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Nonunique UPGMA clusterings of microsatellite markers.

• Authors : Segura-Alabart, Natàlia¹ (AUTHOR); Serratosa, Francesc¹ (AUTHOR); Gómez, Sergio¹ (AUTHOR)

• Source: Briefings in Bioinformatics. Sep2022, Vol. 23 Issue 5, p1-7. 7p.

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High-performance deep learning pipeline predicts individuals in mixtures of DNA using sequencing data.

• Authors : Phan, Nam Nhut^1,2,3 (AUTHOR); Chattopadhyay, Amrita³ (AUTHOR); Lee, Tsui-Ting⁴ (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2021, Vol. 22 Issue 6, p1-11. 11p.

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Critical assessment of bioinformatics methods for the characterization of pathological repeat expansions with single-molecule sequencing data.

• Authors : Chiara, Matteo^1,2 (AUTHOR); Zambelli, Federico^1,2 (AUTHOR); Picardi, Ernesto^2,3 (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2020, Vol. 21 Issue 6, p1971-1986. 16p.

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MSI-XGNN: an explainable GNN computational framework integrating transcription- and methylation-level biomarkers for microsatellite instability detection.

• Authors : Cao, Yang¹ (AUTHOR); Wang, Dan² (AUTHOR); Wu, Jin³ (AUTHOR)

• Source: Briefings in Bioinformatics. Nov2023, Vol. 24 Issue 6, p1-16. 16p.

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Detecting short tandem repeats from genome data: opening the software black box.

• Authors : Merkel, Angelika¹ ; Gemmell, Neil²

• Source: Briefings in Bioinformatics. Sep2008, Vol. 9 Issue 5, p355-366. 12p. 3 Charts, 3 Graphs.

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Sequencing technologies and tools for short tandem repeat variation detection.

• Authors : Cao MD; Balasubramanian S; Bodén M

Subjects: Microsatellite Repeats*; High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/High-Throughput Nucleotide Sequencing/*statistics & numerical data; Computational Biology/Computational Biology/Computational Biology/methods

• Source: Briefings in bioinformatics [Brief Bioinform] 2015 Mar; Vol. 16 (2), pp. 193-204. Date of Electronic Publication: 2014 Feb 06.Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print-Electronic Cited Medium: Internet ISSN:

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Microsatellite instability status differentially associates with intratumoral immune microenvironment in human cancers.

• Authors : Zhang, Peng¹ (AUTHOR); Liu, Mingyue² (AUTHOR); Cui, Ya³ (AUTHOR)

• Source: Briefings in Bioinformatics. May2021, Vol. 22 Issue 3, p1-8. 8p.

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DITHER: an algorithm for Defining IntraTumor Heterogeneity based on EntRopy.

• Authors : Li, Lin; Chen, Canping; Wang, Xiaosheng

Subjects: ENTROPY (Information theory); SOMATIC mutation; HETEROGENEITY

• Source: Briefings in Bioinformatics; Nov2021, Vol. 22 Issue 6, p1-13, 13p

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MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data.

• Authors : Han, Xinyin; Zhang, Shuying; Zhou, Daniel Cui

Subjects: CELL-free DNA; CIRCULATING tumor DNA; CANCER prognosis

• Source: Briefings in Bioinformatics; Sep2021, Vol. 22 Issue 5, p1-10, 10p

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